Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Metabolomics
•
reset
16
votes
12
replies
2.3k
views
VST transformation (DESeq2) for metabolomics data
vst
Metabolomics
DESeq2
2.0 years ago • updated 24 months ago
Joan Miró
▴ 80
5
votes
7
replies
2.3k
views
XCMS obiwarp adjustRtime issue
xcms
obiwarp
adjustrtime
metabolomics
updated 6.5 years ago by
Johannes Rainer
★ 2.0k • written 6.5 years ago by
bhgyu
▴ 30
4
votes
7
replies
1.9k
views
Issues uploading database for metabolomic data analysis with Pathway Activity Profiling - PAPi
papi
metabolomics
pathway analysis
updated 7.2 years ago by
k_hulce
▴ 10 • written 8.0 years ago by
hp71727
▴ 10
3
votes
2
replies
3.2k
views
limma for metabolite data
limma
metabolomics
limma paired analysis
updated 2.4 years ago by
Francisco
• 0 • written 7.0 years ago by
mahes.muniandy
• 0
3
votes
3
replies
2.2k
views
installing xcms and faahKO package
metabolomics
updated 6.6 years ago by
Laurent Gatto
1.6k • written 6.6 years ago by
Ali.Moazzami
▴ 10
3
votes
1
reply
2.2k
views
Tutorial:
Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry
proteomics
metabolomics
Tutorial
written 3.5 years ago by
Johannes Rainer
★ 2.0k
2
votes
9
replies
2.6k
views
Unexpected total ion count (TIC) with xcms package
xcms
metabolomics
updated 9.0 years ago by
Thomas Lin Pedersen
▴ 70 • written 9.0 years ago by
Johannes Rainer
★ 2.0k
2
votes
0
replies
914
views
Job:
PostDoc position for the analysis of large scale metabolomics data
metabolomics
proteomics
Job
3.6 years ago
Johannes Rainer
★ 2.0k
1
vote
2
replies
1.5k
views
Package won't recognise raw data files
camera
metabolomics
r
6.4 years ago
bhgyu
▴ 30
1
vote
0
replies
771
views
Job:
Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
metabolomics
lipidomics
clinical research
data integration
biostatistics
Job
4.2 years ago
Tommi Suvitaival
▴ 10
1
vote
3
replies
2.5k
views
XCMS2 on MSMS data
xcms
metabolomics
massspectrometry
lipidomics
bioconductor
8.3 years ago
Titan
• 0
1
vote
2
replies
1.1k
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics
proteomics
MassSpectrometry
3.3 years ago
Oliver
• 0
1
vote
4
replies
2.2k
views
How to get from xcmsRaw to a xcmsSet
xcms
metabolomics
updated 9.0 years ago by
Thomas Lin Pedersen
▴ 70 • written 9.0 years ago by
Johannes Rainer
★ 2.0k
1
vote
0
replies
1.5k
views
Normalization of metabolomics/lipidomics data for limma
Lipidomics
Metabolomics
limma
Normalization
2.8 years ago
pgugger
▴ 70
0
votes
0
replies
1.8k
views
Job:
Data scientist/bioinformatician - Paris
Genomics
metabolomics
biostatistics
data integration
Job
8.5 years ago
David Enot
▴ 30
0
votes
4
replies
2.8k
views
mzR could not be loaded on XCMS
xcms
msdata
mzR
Rcpp
metabolomics
8.3 years ago
Titan
• 0
0
votes
4
replies
2.8k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms
metabolomics
lipidomics
statistics
8.3 years ago
Titan
• 0
0
votes
3
replies
2.1k
views
Problem with XCMS
xcms
metabolomics
lipidomics
proteomics
massspectrometry
8.3 years ago
Titan
• 0
0
votes
0
replies
1.2k
views
fillPeaks not calculating "intb" values.
xcms
metabolomics
8.2 years ago
Johannes Rainer
★ 2.0k
0
votes
6
replies
2.7k
views
Help Error could not find function xcmsSet
xcms
metabolomics
mzr rcpp
ramp
8.0 years ago
dfrtyu
• 0
0
votes
1
reply
1.6k
views
metaMS for analysis of GC-MS data
metaMS
xcms
GC-MS
metabolomics
volatile organic compounds
updated 7.9 years ago by
ron.wehrens
▴ 20 • written 7.9 years ago by
lucie.conchou
• 0
0
votes
1
reply
1.4k
views
findneutral xcms xcmsSet
R
metabolomics
LC-MS
xcms
readMzXmlData
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
micheleserra
• 0
0
votes
2
replies
1.7k
views
Extracting subclusters from original data
complexheatmap
metabolomics
updated 6.7 years ago by
sina.nassiri
▴ 130 • written 6.7 years ago by
Mina
• 0
0
votes
1
reply
1.0k
views
MAIT or Specmine
metabolomics
mait
specmine
mass spectrometry
6.5 years ago
bhgyu
▴ 30
0
votes
0
replies
1.1k
views
CAMERA error - isotopeProportionFits
camera
metabolomics
6.3 years ago
bhgyu
▴ 30
0
votes
0
replies
1.1k
views
Job:
Postdoctoral Position: Posttranscriptional gene regulation in T cells (analysis of RNAseq, metabolomics)
Basel
switzerland
RNAseq
metabolomics
Job
6.0 years ago
Robert Ivanek
▴ 730
0
votes
1
reply
1.5k
views
Metabolite identification package
xcms
massspectrometry
metabolomics
updated 6.0 years ago by
Johannes Rainer
★ 2.0k • written 6.0 years ago by
johnhamre3
• 0
0
votes
0
replies
1.0k
views
'names' attribute must be the same length as the vector - PAPi problems
PAPi
metabolomics
pathway analysis
raphael
5.8 years ago
maryke.wijma
• 0
0
votes
0
replies
1.3k
views
Job:
Postdoctoral researcher in Computational Metabolomics
xcms
metabolomics
population
metabolism
job
Job
updated 5.3 years ago by
Resume101
• 0 • written 5.4 years ago by
Johannes Rainer
★ 2.0k
0
votes
0
replies
1.0k
views
Job:
Postdoctoral researcher in Computational Metabolomics
metabolomics
xcms
Job
5.2 years ago
Johannes Rainer
★ 2.0k
0
votes
0
replies
773
views
How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r
metabolomics
KEGG
Proteomics
Transcriptomics
5.1 years ago
Wuschel
▴ 10
0
votes
5
replies
1.2k
views
runInfo returns startTimeStamp -infinity
lcms
mzR
metabolomics
xcms
MSnbase
updated 4.6 years ago by
Laurent Gatto
1.6k • written 4.6 years ago by
pol.soladelossantos
• 0
0
votes
4
replies
839
views
ProFIA package error for noise estimation
software error
proFIA
HRMS
FIA
Metabolomics
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
Esther G.
• 0
0
votes
0
replies
609
views
Plot of variable importance
Metabolomics
21 months ago
Eddie
• 0
0
votes
1
reply
1.2k
views
OPLS-DA permutation test
Metabolomics
updated 2.0 years ago by
etienne.thevenot
▴ 40 • written 2.0 years ago by
Eddie
• 0
0
votes
0
replies
657
views
Job:
Director of Metabolomics, University of Illinois Urbana-Champaign
Metabolomics
2.1 years ago
Jenny Drnevich
★ 2.0k
0
votes
0
replies
449
views
Negative Q2Y
Metabolomics
21 months ago
Eddie
• 0
0
votes
2
replies
766
views
variableMetadata for metabolites dataset
Metabolomics
updated 2.0 years ago by
Etienne
• 0 • written 2.2 years ago by
Eddie
• 0
0
votes
1
reply
1.3k
views
Permutation test for OPLS-DA
Metabolomics
updated 2.0 years ago by
etienne.thevenot
▴ 40 • written 2.1 years ago by
Eddie
• 0
0
votes
5
replies
1.6k
views
ROC plot for OPLS-DA
Metabolomics
updated 22 months ago by
etienne.thevenot
▴ 40 • written 2.0 years ago by
Eddie
• 0
0
votes
1
reply
1.6k
views
OPLS package with @subsetVi = numeric(0)
metabolomicsWorkbenchR
PLS
OPLS
Metabolomics
ropls
updated 2.7 years ago by
etienne.thevenot
▴ 40 • written 2.7 years ago by
Fernando
• 0
0
votes
1
reply
566
views
What does it mean when the permI set to different values give the same result
Metabolomics
ropls
updated 16 months ago by
etienne.thevenot
▴ 40 • written 16 months ago by
ansari.maya022
• 0
0
votes
2
replies
795
views
OPLS-DA: confidence interval for accuracy metric
Metabolomics
20 months ago
Eddie
• 0
0
votes
1
reply
595
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity
Metabolomics
Bioconductor
xcms
spectralMatching
updated 14 months ago by
thomas.nigel.lawson
• 0 • written 18 months ago by
hp71727
▴ 10
0
votes
1
reply
832
views
OPLS-DA for paired samples
Metabolomics
updated 2.0 years ago by
etienne.thevenot
▴ 40 • written 2.1 years ago by
Eddie
• 0
0
votes
1
reply
732
views
compute molecular mass from chemical formula
Metabolomics
written 3.0 years ago by
wewolski
▴ 10
0
votes
2
replies
711
views
Error received in ropls package
Metabolomics
ropls
updated 17 months ago by
etienne.thevenot
▴ 40 • written 17 months ago by
ansari.maya022
• 0
0
votes
4
replies
2.1k
views
OPLS-DA: values of pR2Y and pR2Q
Metabolomics
2.1 years ago • updated 22 months ago
Eddie
• 0
0
votes
1
reply
574
views
limma on spectral data
limma
Metabolomics
DifferentialExpression
POMA
updated 15 months ago by
Gordon Smyth
50k • written 15 months ago by
wiscoyogi
• 0
0
votes
1
reply
671
views
Code for the Q2Ys from permutation test
Metabolomics
updated 22 months ago by
etienne.thevenot
▴ 40 • written 22 months ago by
Eddie
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
Awards
• All
Popular Question
to
i.sudbery
▴ 40
Scholar
to
Michael Love
41k
Popular Question
to
shepherl
3.8k
Scholar
to
Gordon Smyth
50k
Popular Question
to
taur.vil
• 0
Locations
• All
Canada,
just now
United States,
just now
France/Marseille/Inserm,
2 minutes ago
United States,
2 minutes ago
United States,
3 minutes ago
Traffic: 671 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6