Bioconductor MethylationArray

Showing : MethylationArray • reset

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779

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linearregression epicarray MethylationArray limma

8 months ago Jitendra ▴ 10

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2.4k

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MethylationArray methylationArrayAnalysis ChAMP

updated 6 months ago by dorota.komar • 0 • written 3.4 years ago by Ankit ▴ 20

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TCGAMethylation450k MethylationArray TCGAbiolinks Tcga TCGAbiolinksGUI.data

8 weeks ago BioinfoMug • 0

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549

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methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray

updated 11 months ago by belinda.phipson ▴ 40 • written 11 months ago by Grace • 0

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451

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edgeR MethylationArray

8 weeks ago mico • 0

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268

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MethylationArray methylationArrayAnalysis ChAMP

updated 8 weeks ago by James W. MacDonald 65k • written 9 weeks ago by david.cheishvili • 0

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438

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

11 weeks ago mikat • 0

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303

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edgeR MethylationArray

11 weeks ago mico • 0

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136

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MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData

7 weeks ago • updated 5 weeks ago Giovanni Calice ▴ 160

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235

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 7 weeks ago by belinda.phipson ▴ 40 • written 7 weeks ago by s.malik • 0

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715

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MethylationArray methylationArrayAnalysis

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by henry-keen • 0

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425

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minfi MethylationArray

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by sharangiiv • 0

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699

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edgeR MethylationArray

updated 7 weeks ago by Gordon Smyth 50k • written 8 weeks ago by mico • 0

13 results • Page 1 of 1

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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0

Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …

Votes

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0