Biostar MethylationArray

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MethylationArray methylationArrayAnalysis ChAMP

updated 7 weeks ago by l.milicic • 0 • written 17 months ago by Ankit ▴ 10

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MethylationArray limma

16 months ago • updated 15 months ago MoltenLight ▴ 10

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166

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limma MethylationArrayData MethylationArray

7 weeks ago • updated 6 weeks ago fluentin44 • 0

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limma methylation MethylationArray

updated 22 days ago by James W. MacDonald 60k • written 22 days ago by fluentin44 • 0

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258

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GeneExpression methyAnalysis MethylationArray

18 months ago coobzie • 0

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419

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sva limma methylation MethylationArray

16 months ago epibio ▴ 10

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Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a by Gordon Smyth 45k

When I answered your original question, I assumed you would use the simplest possible code ``` Status <- factor(Sample_info$Status) ``` w…

Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a by Mohamed • 0

Thanks a lot, will try this and see.

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a by Steve Lianoglou 13k

> My question is why the design matrix named its last column ' StatusControl' and not 'statustreated' ? It's because the Intercept is th…

Comment: Italicise by Kevin Blighe 3.5k

Hi, can you compare the contents of your variable, `lab_italics` , versus those of the variable (`selectLab_italics`) that is produced in m…

Comment: Need help for ProStaR Stand-alone install by Wang • 0

Hi, I have installed the "Prostar" package, and loaded in my rstudio work session. But, when I trying to use the Prostar() for open a GUI …

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Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a

Answer: biomaRt error unable to fix: need help troubleshooting

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.

DESeq2: likelihood ratio test interpretation, multifactor

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Teacher to Michael Love 37k