Bioconductor MethylationArray

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133

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MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData

6 weeks ago • updated 4 weeks ago Giovanni Calice ▴ 160

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226

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 6 weeks ago by belinda.phipson ▴ 40 • written 6 weeks ago by s.malik • 0

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674

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edgeR MethylationArray

updated 6 weeks ago by Gordon Smyth 50k • written 7 weeks ago by mico • 0

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144

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TCGAMethylation450k MethylationArray TCGAbiolinks Tcga TCGAbiolinksGUI.data

7 weeks ago BioinfoMug • 0

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436

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edgeR MethylationArray

7 weeks ago mico • 0

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255

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MethylationArray methylationArrayAnalysis ChAMP

updated 8 weeks ago by James W. MacDonald 65k • written 8 weeks ago by david.cheishvili • 0

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409

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minfi MethylationArray

updated 9 weeks ago by James W. MacDonald 65k • written 9 weeks ago by sharangiiv • 0

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296

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edgeR MethylationArray

10 weeks ago mico • 0

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419

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

10 weeks ago mikat • 0

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700

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MethylationArray methylationArrayAnalysis

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by henry-keen • 0

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770

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linearregression epicarray MethylationArray limma

8 months ago Jitendra ▴ 10

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543

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methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray

updated 11 months ago by belinda.phipson ▴ 40 • written 11 months ago by Grace • 0

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DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray

updated 11 months ago by Tim Peters ▴ 170 • written 12 months ago by Grace • 0

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2.4k

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MethylationArray methylationArrayAnalysis ChAMP

updated 6 months ago by dorota.komar • 0 • written 3.4 years ago by Ankit ▴ 20

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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