Bioconductor MethylationArray

Showing : MethylationArray • reset

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770

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linearregression epicarray MethylationArray limma

8 months ago Jitendra ▴ 10

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2.4k

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MethylationArray methylationArrayAnalysis ChAMP

updated 6 months ago by dorota.komar • 0 • written 3.4 years ago by Ankit ▴ 20

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1.0k

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DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray

updated 11 months ago by Tim Peters ▴ 170 • written 11 months ago by Grace • 0

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539

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methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray

updated 11 months ago by belinda.phipson ▴ 40 • written 11 months ago by Grace • 0

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253

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MethylationArray methylationArrayAnalysis ChAMP

updated 8 weeks ago by James W. MacDonald 65k • written 8 weeks ago by david.cheishvili • 0

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415

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

10 weeks ago mikat • 0

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292

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edgeR MethylationArray

10 weeks ago mico • 0

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432

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edgeR MethylationArray

7 weeks ago mico • 0

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143

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TCGAMethylation450k MethylationArray TCGAbiolinks Tcga TCGAbiolinksGUI.data

7 weeks ago BioinfoMug • 0

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132

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MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData

6 weeks ago • updated 4 weeks ago Giovanni Calice ▴ 160

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224

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 6 weeks ago by belinda.phipson ▴ 40 • written 6 weeks ago by s.malik • 0

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693

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MethylationArray methylationArrayAnalysis

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by henry-keen • 0

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408

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minfi MethylationArray

updated 9 weeks ago by James W. MacDonald 65k • written 9 weeks ago by sharangiiv • 0

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669

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edgeR MethylationArray

updated 6 weeks ago by Gordon Smyth 50k • written 7 weeks ago by mico • 0

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

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Scholar to Peter Hickey ▴ 740