Showing : MethylationArrayData • reset
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Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 2 days ago by 67k • written 2 days ago by • 0
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346
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Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 4 months ago by 67k • written 4 months ago by ▴ 10
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425
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TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
10 months ago Giovanni Calice ▴ 160
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Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
13 months ago kyj2226 • 0
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6
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Methylation data analysis
MethylationArrayData methylationArrayAnalysis
14 months ago aldea85 • 0
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923
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 17 months ago by 67k • written 17 months ago by • 0
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793
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Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
18 months ago Arianna • 0
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1.1k
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
19 months ago Irene • 0
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1
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811
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 21 months ago by ▴ 40 • written 21 months ago by • 0
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cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 21 months ago by ▴ 200 • written 21 months ago by • 0
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770
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LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 22 months ago by 52k • written 22 months ago by • 0
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4
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1.5k
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Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 22 months ago by 67k • written 22 months ago by • 0
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1.8k
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minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 23 months ago by • 0
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2
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2.1k
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ChAMP package:Error in cmdscale(d) : 'k' must be in {1, 2, .. n - 1}
MethylationArrayData
2.2 years ago shuangshuang • 0
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2
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1.6k
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Limma vs. lm for methylation data
limma MethylationArrayData MethylationArray
2.8 years ago fluentin44 • 0
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932
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.8 years ago Jitendra ▴ 10
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1.1k
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Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
3.2 years ago Paulina • 0
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1.0k
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DNA methylation EPIC array and ChromHMM
chromhmmData MethylationArrayData
3.4 years ago macsue.jacques ▴ 10
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1.0k
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minfi - estimateCellCounts2-proportions sum more than 1
minfi minfiData MethylationArrayData
3.5 years ago ponche_de_kiwi • 0
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6
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4.0k
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Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
3.5 years ago FWNL15 • 0
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1
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1.1k
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Error in reading metharray sheet
DifferentialMethylation MethylationArrayData
updated 3.6 years ago by ▴ 780 • written 3.6 years ago by • 0
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1.3k
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How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
3.9 years ago D ▴ 10
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4
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3.4k
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Unable to read in the IDAT files using read.metharray.exp()
MethylationArrayData methy Bioconductor minfi
3.9 years ago shweta • 0
1
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1
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2.8k
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DMR Plot
dmr MethylationArrayData DMRcatedata
updated 4.2 years ago by 67k • written 4.2 years ago by • 0
24 results • Page 1 of 1
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Answer: Postdoc/RA position: Software Engineer For R and High-Performance Computing by delhirussianescortscom • 0
Our escorts are well-groomed and well-trained to give you ultimate seduction and deep pleasure. If you're looking for hot Delhi air hostess…
Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…
Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k
Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…
Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0
Thank you so much ! It's working !
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k
Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…
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A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
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