Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Minfi
•
reset
0
votes
7
replies
2.9k
views
Is anyone able to explain the statistics behind the dmpFinder function in minfi package?
minfi
methylation
dmpfinder
limma
updated 6.9 years ago by
vulegom
• 0 • written 7.5 years ago by
mcall
▴ 20
3
votes
15
replies
4.3k
views
Installing MethylationEPIC minifest and annotation
minfi
methylation
illuminahumanmethylationepicmanifest
illumina
8.0 years ago
rasii
• 0
2
votes
8
replies
3.9k
views
"minfi" loading problem because of couldn't "bumphunter" load
bumphunter
minfi
loading error
rtracklayer
updated 6.8 years ago by
nilan666
• 0 • written 6.9 years ago by
juan-pablo.cerapio-arroyo
▴ 10
0
votes
7
replies
1.4k
views
Minfi read.metharray error in checkslotassignment
minfi
read.metharray.exp
updated 5.7 years ago by
shubhamrock19998
• 0 • written 6.6 years ago by
lily
• 0
2
votes
11
replies
9.0k
views
Minfi error in reading Basename column
methylation
minfi
updated 7.5 years ago by
SplittingInfinity
▴ 60 • written 8.6 years ago by
parap
• 0
0
votes
5
replies
1.5k
views
minfi preprocessQuantile problem
minfi
updated 7.3 years ago by
Kasper Daniel Hansen
★ 6.5k • written 7.3 years ago by
frederic.fournier
• 0
0
votes
10
replies
2.2k
views
MethyLumiM to MethyLumiSet?
convert
lumi
methylumi
minfi
wateRmelon
convert
lumi
methylumi
minfi
wateRmelon
updated 10.4 years ago by
Tim Triche
★ 4.2k • written 10.4 years ago by
Martin Rijlaarsdam
▴ 190
0
votes
3
replies
1.5k
views
MINFI missing samples in qcreports and densityplots
minfi
illumina
methylationEPIC
densityplot
7.2 years ago
annabelle.congras
▴ 10
1
vote
10
replies
3.0k
views
minfi, lumi, methylumi, DMRcate installation error
minfi
lumi
methylumi
dmrcate
illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.0 years ago by
Tim Peters
▴ 160 • written 7.0 years ago by
poojitha.stemcell
▴ 10
3
votes
7
replies
2.8k
views
estimateCellCounts Visualisations - Adjusting Beta Values for Plotting
minfi
limma
updated 8.1 years ago by
Smeeta Shrestha
▴ 20 • written 8.7 years ago by
andrew.j.skelton73
▴ 370
0
votes
6
replies
2.1k
views
ChAMP filter removing good samples from different batch of EPIC arrays.
minfi
champ
updated 6.6 years ago by
Yuan Tian
▴ 90 • written 6.7 years ago by
sarka.vorackova
• 0
0
votes
3
replies
2.0k
views
how to do a paired analysis with minfi?
limma
minfi
limma
minfi
updated 8.6 years ago by
James W. MacDonald
65k • written 10.7 years ago by
Pablo marin-garcia
▴ 90
0
votes
3
replies
2.0k
views
minfi getProbeInfo error ( was WateRmelon betaqn error)
watermelon
betaqn
pfilter
getProbeInfo
minfi
9.1 years ago
gctromp
▴ 10
1
vote
33
replies
3.9k
views
minfi failed positions in EPIC array
minfi
illuminahumanmethylationepicanno.ilmn10b.hg19
7.8 years ago • updated 7.7 years ago
Giovanni Calice
▴ 160
0
votes
11
replies
3.6k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate
minfi
updated 8 weeks ago by
Tim Peters
▴ 160 • written 7.0 years ago by
Jenny Drnevich
★ 2.0k
1
vote
6
replies
1.8k
views
Reading 450k data in minfi
450K
minfi
updated 5.1 years ago by
laurenz.holcik
• 0 • written 5.1 years ago by
lalchungnungabt17
• 0
0
votes
9
replies
3.0k
views
clarification about bumphunter value output
minfi
bumphunter
updated 10 months ago by
Jennifer Dehner
• 0 • written 6.1 years ago by
src3
• 0
4
votes
4
replies
1.2k
views
Illumina Methylation 27k minfi
microarray
methylation
illumina27k
minfi
updated 5.1 years ago by
Kasper Daniel Hansen
★ 6.5k • written 5.1 years ago by
laurenz.holcik
• 0
1
vote
2
replies
3.3k
views
minfi, bumphunter + complex experimental design, and 3 other 450K queries
GO
convert
minfi
bumphunter
GO
convert
minfi
bumphunter
updated 8.2 years ago by
david.watson
▴ 30 • written 9.9 years ago by
Guido Hooiveld
★ 3.9k
1
vote
5
replies
2.4k
views
Meaning of the value column in bumphunter output (minfi package)
minfi
bumphunter
updated 6.1 years ago by
src3
• 0 • written 6.9 years ago by
Antonio M.
• 0
0
votes
8
replies
5.1k
views
Error using read.metharray.exp in minfi to read idat files
minfi
read.metharray.exp
idat
HM450k
6.4 years ago
poojitha.stemcell
▴ 10
6
votes
3
replies
9.6k
views
Minfi issue: return code from pthread_create() is 22
minfi
450k
updated 12 months ago by
Sin
• 0 • written 4.7 years ago by
jshouse
▴ 10
0
votes
3
replies
2.1k
views
smoothing function in bumphunter in minfi
minfi
bumphunter
minfi
bumphunter
9.8 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
5
replies
2.0k
views
Is it possible to convert Methylumi object into RGChannelSet
microarray
minfi
methylumi
illumina450k
7.4 years ago • updated 6.5 years ago
poojitha.stemcell
▴ 10
0
votes
2
replies
1.3k
views
estimate cell counts in CordBlood using mini
minfi
cellcounts
cordblood
7.5 years ago
darina
• 0
0
votes
3
replies
2.0k
views
DNA Methylation in R
minfi
7.2 years ago
pbachali
▴ 50
1
vote
3
replies
999
views
Positions to genes in minfi
genomicranges
minfi
7.7 years ago • updated 7.6 years ago
Asma rabe
▴ 290
0
votes
3
replies
951
views
cpgCollapse in Minfi
minfi
updated 6.1 years ago by
Hector Corrada Bravo
▴ 60 • written 6.1 years ago by
cbartle3
• 0
2
votes
6
replies
1.8k
views
Bumphunting for longitudinal data
bumphunter
minfi
lmer
dmrcate
dmr analysis
updated 5.9 years ago by
Tim Peters
▴ 160 • written 5.9 years ago by
Ashlynn
• 0
0
votes
5
replies
2.0k
views
DNA methylation analysis without raw data IDAT files
r
illimina 450k methylation
minfi
champ
tcga
updated 5.6 years ago by
Yuan Tian
▴ 270 • written 5.6 years ago by
Beginner
▴ 60
0
votes
5
replies
2.0k
views
Coercion lumi/minfi objects
lumi
minfi
lumi
minfi
updated 10.1 years ago by
Tim Triche
★ 4.2k • written 10.1 years ago by
Aileen Bahl
▴ 10
2
votes
2
replies
1.3k
views
limma for 450K methylation array data
limma
minfi
7.7 years ago
Andreas Paul
• 0
1
vote
6
replies
1.9k
views
minfi and lumi not available for version 3.3.2
minfi
lumi
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
Jessie.Johnson
▴ 10
0
votes
3
replies
2.2k
views
batch effects 450K
Clustering
Cancer
Breast
minfi
sva
Clustering
Cancer
Breast
minfi
sva
updated 11.8 years ago by
Brent Pedersen
▴ 110 • written 11.8 years ago by
Guest User
★ 13k
1
vote
2
replies
1.6k
views
minfi: error with estimateCellCounts
minfi
8.3 years ago
Brian Smith
▴ 120
0
votes
2
replies
1.3k
views
Minfi error with new R and bioconductor update
minfi
updated 8.4 years ago by
Methyl
▴ 50 • written 8.4 years ago by
methyl
• 0
0
votes
3
replies
1.5k
views
Forum: minfi: NA values in RGChannelSet
minfi
8.0 years ago
philipp24
▴ 30
6
votes
2
replies
4.1k
views
Plotting Differentially Methylated Regions
minfi
bumphunter
450k
region
updated 7.3 years ago by
Dimitris Polychronopoulos
▴ 80 • written 8.0 years ago by
cardenasca
▴ 40
0
votes
2
replies
1.2k
views
error using EPIC early access version arrays with minfi
epic
minfi
read.metharray
software error
7.8 years ago
mcastrod
• 0
0
votes
5
replies
3.4k
views
doParallel with Bumphunter gives Error in mcfork()
minfi
bumphunter
minfi
bumphunter
updated 10.0 years ago by
Tim Triche
★ 4.2k • written 10.0 years ago by
Guest User
★ 13k
0
votes
2
replies
1.3k
views
minfi not available for R vs 2.15.1
minfi
minfi
updated 11.6 years ago by
Dan Tenenbaum
★ 8.2k • written 11.6 years ago by
Guest User
★ 13k
1
vote
2
replies
1.6k
views
Problem reading EPIC array data: different bead locations on different EPIC Chips
minfi
illuminaio
epic
7.7 years ago
m.van_iterson
▴ 20
0
votes
3
replies
1.9k
views
minfi release 1.8
SNP
Annotation
GO
probe
SNPlocs
PROcess
minfi
bumphunter
ChAMP
SNP
Annotation
GO
probe
updated 10.1 years ago by
Smeeta Shrestha
▴ 20 • written 10.2 years ago by
Tim Triche
★ 4.2k
2
votes
7
replies
2.2k
views
preprocessNoob + preprocessQuantile Error handling preprocessMethod
minfi
updated 8.6 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.6 years ago by
andrew.j.skelton73
▴ 370
10
votes
3
replies
2.6k
views
minfi - estimateCellCount
minfi
8.7 years ago
Methyl
▴ 50
0
votes
3
replies
1.9k
views
Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
Cancer
convert
minfi
Cancer
convert
minfi
updated 8.4 years ago by
diana0690
• 0 • written 10.1 years ago by
Kasper Daniel Hansen
★ 6.5k
2
votes
2
replies
2.5k
views
Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe
annotation
illimina 450k methylation
minfi
methylation
8.7 years ago
metamaden
▴ 10
0
votes
2
replies
2.6k
views
Illumina 450k Manifest: Probes Mapping to Multiple RefGene Groups and Names
illuminahumanmethylation450kanno.ilmn12.hg19
minfi
illuminahumanmethylation450k.db
methylation
updated 23 months ago by
Will
• 0 • written 8.5 years ago by
metamaden
▴ 10
0
votes
3
replies
2.0k
views
Unknown annotation in the RGChannelSetExtended object
minfi
idat
annotation
EPIC
updated 7.0 years ago by
xue.zhang
• 0 • written 7.1 years ago by
Frocha
▴ 20
0
votes
4
replies
882
views
Fix regions for bumphunter
bumphunter
DMR
methylation
minfi
4.2 years ago • updated 4.1 years ago
i.s.brorson
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Awards
• All
Popular Question
to
Dario Strbenac
★ 1.5k
Popular Question
to
Ankit
▴ 20
Popular Question
to
michael.s
• 0
Popular Question
to
James W. MacDonald
65k
Popular Question
to
Pierre Lindenbaum
▴ 10
Locations
• All
United States,
just now
France,
9 minutes ago
United States,
11 minutes ago
Canada,
15 minutes ago
United States,
22 minutes ago
Traffic: 774 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6