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0
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594
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TFutils database
TFutils
mouse
gene
convert
2.8 years ago
nicocillari
• 0
3
votes
4
replies
1.4k
views
AnnotationData package for Affymetrix HT MG-430 PM Array Plate
RNAseq
Affymetrix
Mouse
updated 3.4 years ago by
Guido Hooiveld
★ 3.9k • written 3.5 years ago by
olrema
• 0
1
vote
3
replies
2.2k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
4.3 years ago
dmgatti
▴ 10
0
votes
3
replies
1.1k
views
Choosing DESeq2 design for mice experiment
deseq2
mouse
rnaseq
6.3 years ago
Emilie
• 0
0
votes
1
reply
1.5k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 6.5 years ago by
Mike Smith
★ 6.5k • written 6.5 years ago by
julie.chevalier
• 0
6
votes
1
reply
6.2k
views
Finding orthologous human/mouse ENSEMBL IDs
human
mouse
ensembl
annotationdbi
homologue
6.8 years ago
Keith Hughitt
▴ 180
0
votes
1
reply
1.2k
views
Annotation for Mouse Illumina Expression Chip V6.1.1
bead chip
Annotation
Mouse
Lumi
probeID2nuID
updated 7.7 years ago by
Andy Lynch
▴ 120 • written 7.7 years ago by
smt8n
• 0
0
votes
0
replies
1.1k
views
News:
Ensembl release 82 is out!
biomart
ensembl
release82
variation
mouse
News
8.5 years ago
Thomas Maurel
▴ 800
5
votes
2
replies
2.6k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 8.7 years ago by
Sonali Arora
▴ 390 • written 8.7 years ago by
Thomas Maurel
▴ 800
9 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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