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Mouse
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reset
0
votes
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replies
593
views
TFutils database
TFutils
mouse
gene
convert
2.8 years ago
nicocillari
• 0
3
votes
4
replies
1.4k
views
AnnotationData package for Affymetrix HT MG-430 PM Array Plate
RNAseq
Affymetrix
Mouse
updated 3.4 years ago by
Guido Hooiveld
★ 3.9k • written 3.4 years ago by
olrema
• 0
1
vote
3
replies
2.2k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
4.3 years ago
dmgatti
▴ 10
0
votes
3
replies
1.1k
views
Choosing DESeq2 design for mice experiment
deseq2
mouse
rnaseq
6.3 years ago
Emilie
• 0
0
votes
1
reply
1.5k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 6.5 years ago by
Mike Smith
★ 6.5k • written 6.5 years ago by
julie.chevalier
• 0
6
votes
1
reply
6.2k
views
Finding orthologous human/mouse ENSEMBL IDs
human
mouse
ensembl
annotationdbi
homologue
6.8 years ago
Keith Hughitt
▴ 180
0
votes
1
reply
1.2k
views
Annotation for Mouse Illumina Expression Chip V6.1.1
bead chip
Annotation
Mouse
Lumi
probeID2nuID
updated 7.7 years ago by
Andy Lynch
▴ 120 • written 7.7 years ago by
smt8n
• 0
0
votes
0
replies
1.1k
views
News:
Ensembl release 82 is out!
biomart
ensembl
release82
variation
mouse
News
8.5 years ago
Thomas Maurel
▴ 800
5
votes
2
replies
2.6k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 8.7 years ago by
Sonali Arora
▴ 390 • written 8.7 years ago by
Thomas Maurel
▴ 800
9 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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James W. MacDonald
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Robert Castelo
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