Bioconductor MultipleComparison

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votes

208

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limmaGUI lim MultipleComparison multip

updated 9 weeks ago by Gordon Smyth 50k • written 9 weeks ago by roger.moreno.justicia • 0

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675

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Linnorm DEG MultipleComparison

updated 6 months ago by shunyip • 0 • written 2.7 years ago by awakumaya • 0

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708

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Proteomics proDA MultipleComparison

7 months ago t.b.n.nguyen-9 • 0

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641

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MultipleComparison DESeq2 Genetics contrasts RNASeq

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by a26fd14e • 0

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655

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DESeq2 MultipleComparison r

updated 16 months ago by Michael Love 41k • written 16 months ago by ncorak • 0

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543

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MultipleComparison DESeq2

updated 23 months ago by Michael Love 41k • written 23 months ago by Joshua • 0

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2.2k

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MultipleComparison edgeR DESeq2

written 2.1 years ago by yuet • 0

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659

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factor DESeq2 MultipleComparison

updated 2.4 years ago by swbarnes2 ★ 1.3k • written 2.4 years ago by diegocastano182 • 0

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953

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GeneExpression R limma MultipleComparison

updated 3.4 years ago by James W. MacDonald 65k • written 3.4 years ago by Gwénolé • 0

9 results • Page 1 of 1

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Votes

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

Awards • All

Scholar to ATpoint ★ 4.0k