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MultipleComparison
•
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2
votes
17
replies
2.1k
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How to reduce the impact of one varaible in Deseq2 or edgeR for multivariate value analysis?
MultipleComparison
edgeR
DESeq2
written 2.0 years ago by
yuet
• 0
0
votes
1
reply
659
views
Multiple groups comparison using Linnorm
Linnorm
DEG
MultipleComparison
updated 5 months ago by
shunyip
• 0 • written 2.7 years ago by
awakumaya
• 0
0
votes
1
reply
167
views
Main effect on multiple comparisons in limma
limmaGUI
lim
MultipleComparison
multip
updated 5 weeks ago by
Gordon Smyth
50k • written 5 weeks ago by
roger.moreno.justicia
• 0
1
vote
4
replies
640
views
How to find differentially expressed proteins from multiple conditions (>2) using proDA?
Proteomics
proDA
MultipleComparison
7 months ago • updated 6 months ago
t.b.n.nguyen-9
• 0
0
votes
1
reply
622
views
Correction for multiple comparison by DeSeq2 - treatment1 vs. control, treatment2 vs. control, ... treatment n vs. control
DESeq2
MultipleComparison
r
updated 15 months ago by
Michael Love
41k • written 15 months ago by
ncorak
• 0
0
votes
1
reply
630
views
DESeq2: Difference between two groups of conditions
factor
DESeq2
MultipleComparison
updated 2.4 years ago by
swbarnes2
★ 1.3k • written 2.4 years ago by
diegocastano182
• 0
1
vote
1
reply
520
views
DESeq2 Multiple Pairwise Comparisons with Odd Set-up
MultipleComparison
DESeq2
updated 22 months ago by
Michael Love
41k • written 22 months ago by
Joshua
• 0
1
vote
3
replies
927
views
Troubles implementing LIMMA for paired samples (before/after treatment) comparaisons
GeneExpression
R
limma
MultipleComparison
updated 3.3 years ago by
James W. MacDonald
65k • written 3.3 years ago by
Gwénolé
• 0
0
votes
3
replies
595
views
Multiple Testing When Using Multiple Contrasts/Comparisons in DESEQ2
MultipleComparison
DESeq2
Genetics
contrasts
RNASeq
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
a26fd14e
• 0
9 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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