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NCBI
•
reset
2
votes
3
replies
437
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio
cDNA
ensembldb
NCBI
3 months ago
R_Page
• 0
2
votes
5
replies
637
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio
convert
ensembldb
NCBI
4 months ago
j_denton
• 0
0
votes
0
replies
613
views
getGFFSet function CRASHES R session
getGFF
NCBI
biomartr
biomaRt
2.6 years ago
Matan G.
▴ 50
2
votes
4
replies
964
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI
NCBI
SQL
AnnotationForge
updated 3.9 years ago by
James W. MacDonald
65k • written 3.9 years ago by
chefer
• 0
1
vote
5
replies
1.2k
views
Gene Ontology analysis
ontology
edger
limma
ncbi
organism package
updated 4.0 years ago by
Gordon Smyth
50k • written 4.0 years ago by
babak.loghmani
▴ 20
0
votes
4
replies
2.2k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread
ncbi
GRCh38
hg38
updated 7.4 years ago by
Wei Shi
★ 3.6k • written 7.4 years ago by
jan.soderman
• 0
0
votes
0
replies
1.4k
views
Search SRA based on BioSample Attributes
ncbi
sra
search
8.2 years ago
massacomgrao
• 0
8
votes
7
replies
3.4k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 8.2 years ago by
Hervé Pagès
16k • written 8.2 years ago by
gokcen.eraslan
▴ 10
2
votes
2
replies
3.1k
views
How to Normalize the Microarray Data Obtained from ncbi?
microarray
normalization
ncbi
updated 8.9 years ago by
James W. MacDonald
65k • written 8.9 years ago by
pankajnarula84
▴ 20
0
votes
1
reply
1.2k
views
.getNcbiURL returns old NCBI url ?
annotate
ncbi
url
9.2 years ago
reuma
• 0
10 results • Page
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Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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Pierre Lindenbaum
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Robert Castelo
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