Showing : NGS • reset
7
votes
4
replies
6.9k
views
how can I tell if a RNAseq BAM file is paired end or single end ?
NGS BAm
updated 9.3 years ago by ▴ 390 • written 9.4 years ago by ▴ 50
1
vote
11
replies
2.5k
views
rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
rsubread BWA NGS
updated 7.6 years ago by ★ 3.6k • written 7.6 years ago by ▴ 10
4
votes
4
replies
2.3k
views
Average read counts and batch-effect correction in edgeR
edgeR batch-effect RNA-seq read counts ngs
updated 5.3 years ago by ★ 28k • written 5.3 years ago by ▴ 20
0
votes
5
replies
4.5k
views
bioconductor package for BWA-MEM ?
bwa ngs
updated 8.7 years ago by 50k • written 8.7 years ago by ▴ 50
1
vote
4
replies
1.7k
views
TarSeqQC TargetExperiment() Error- failed to stop SOCKcluster cluster-error writing to connection
TarSeqQC R ngs biocparallel
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 10
1
vote
3
replies
1.7k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 3.4 years ago by ▴ 190 • written 3.5 years ago by • 0
0
votes
1
reply
1.0k
views
counting reads with muliple hits with SummarizeOverlaps
R seq ngs summarizeoverlaps
updated 6.0 years ago by ★ 6.8k • written 6.1 years ago by • 0
0
votes
1
reply
1.6k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr bigwig coverage ngs
updated 6.5 years ago by ▴ 30 • written 6.5 years ago by • 0
0
votes
6
replies
12k
views
converting fasta file into bam file
ngs
6.8 years ago nosheenfaiz09 • 0
2
votes
1
reply
1.5k
views
rtracklayer BigBed format
ngs rtracklayer bigbed
updated 5.3 years ago by ★ 11k • written 5.3 years ago by ▴ 100
1
vote
0
replies
1.3k
views
Job: Computational Biologist position in CRUK Manchester Institute, UK
bioinformatician job ngs leukemia cancer Job
7.9 years ago Hui Sun Leong ▴ 10
0
votes
0
replies
1.2k
views
Job: Bioinformatician / Statistician Position - Ref.: 2016/45 - in Badalona, Barcelona, Spain
ngs microarray bioinformatician job Job
7.8 years ago Lauro Sumoy ▴ 10
0
votes
0
replies
1.2k
views
Job: Hunting for Human Infectious Agents in Cancer using data from Genomics England's 100,000 genome project : PhD Studentship @ UEA, Norwich
phd cancer pathogens NGS Job
6.9 years ago Daniel Brewer ▴ 100
1
vote
0
replies
1.3k
views
Job: Computational Biologist position in CRUK Manchester Institute, UK
ngs prostate cancer genomics computational biology bioinformatician job Job
6.8 years ago • updated 6.7 years ago huisun.leong ▴ 10
0
votes
0
replies
1.2k
views
Job: Senior Bioinformatician, Children's Cancer Research Institute Vienna, Austria
postdoc rnaseq NGS WGS bioinformatician job Job
6.2 years ago da.de ▴ 30
0
votes
0
replies
1.2k
views
Job: Bioinformatics Engineer / Data Analyst
python bio ngs linux Job
6.1 years ago EMBL Recruitment • 0
0
votes
0
replies
1.3k
views
Job: EXTENDED: Bioinformatics Specialist at the University of Illinois
microbiome epigenomics bioinformatics analyst NGS Job
6.1 years ago Jenny Drnevich ★ 2.0k
0
votes
0
replies
952
views
Sequencing database tool in R: tracking Sanger and NGS of large-scale directed evolution projects
rmysql fastq seqinr ngs sangerseqr
6.0 years ago JoeMG • 0
0
votes
0
replies
1.9k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
5.8 years ago • updated 3.4 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
863
views
Job: Open position for a bioinformatician in Copenhagen
R NGS Job
5.7 years ago gretchen.repasky ▴ 20
0
votes
0
replies
1.3k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
5.2 years ago • updated 4.4 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
851
views
Job: Research Associate in Genomics Pipelines @ UEA, Norwich, UK
pipelines NGS Research associate Docker Job
4.8 years ago Daniel Brewer ▴ 100
0
votes
0
replies
984
views
Job: Two bioinformatics positions at Boston Children's Hospital
NGS Job
updated 3.4 years ago by 41k • written 3.5 years ago by • 0
0
votes
0
replies
640
views
Job: Bioinformatics Analyst/Data Science Analyst
bioinformatics ngsReports NGS analyst science
13 months ago marisona.almazan • 0
0
votes
0
replies
665
views
Rsamtools and data.table OR advice of packages
data.table Rsamtools NGS
2.2 years ago sara • 0
0
votes
0
replies
1.5k
views
Job: Associate Scientist - NGS Informatics @ AstraZeneca (Metro Boston, MA)
cancer translation ngs genomics Job
9.1 years ago jhjohnsn • 0
0
votes
0
replies
104
views
Job: PhD-position in bioinformatics / computational biology
Mergeomics Epigenome Evolution NGS Aging
11 days ago arne.sahm • 0
0
votes
0
replies
984
views
Job: Bioinformatician ('CHBIO15) (m/f)
bioinformatician job Linux NGS Job
5.4 years ago l.brown ▴ 10
1
vote
0
replies
1.4k
views
News: Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 5-8, 2014)
workshop ngs training News
9.5 years ago Thomas Girke ★ 1.7k
0
votes
0
replies
1.7k
views
Job: Bioinformatician / NGS Data Analyst (Stark Group, Vienna, Austria)
bioinformatician job ngs genomics Job
9.0 years ago stark • 0
1
vote
0
replies
2.2k
views
Job: Postdoctoral/Senior Scientist Position in New York City- Mount Sinai School of Medicine
genomics data integration job ngs computational biology Job
8.9 years ago supindab ▴ 10
0
votes
0
replies
1.4k
views
Job: Senior Research Associate in Bioinformatics, Norwich Medical School, UEA, UK
bioinformatician job biofilm NGS Job
8.7 years ago Daniel Brewer ▴ 100
1
vote
0
replies
1.6k
views
Job: Job Opening: Computational Biologists in Cambridge, MA and NYC
ngs computational biology R genomics bioinformatics Job
8.5 years ago mmartin ▴ 20
0
votes
0
replies
2.0k
views
Job: Bioinformatics Data Analyst in Cancer Immunology
job NGS Data Analyst Cancer Job
8.2 years ago Jaritz,Markus ▴ 20
0
votes
0
replies
1.6k
views
Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job bioinformatics ngs genomics statistics Job
8.1 years ago Hui Sun Leong ▴ 10
0
votes
0
replies
1.4k
views
Job: 2015 Movember Foundation PhD Studentship in Bioinformatics @ UEA, Norwich, UK
Phd NGS cancer prostate Job
8.1 years ago Daniel Brewer ▴ 100
36 results • Page 1 of 1
Recent ...
Replies
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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