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NMF
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2.8k
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NMF installation with current R version
NMF
Biobase
updated 23 months ago by
shepherl
3.8k • written 23 months ago by
Abhishek
• 0
5
votes
5
replies
1.7k
views
Running NMF for single cell
NMF
scater
3.5 years ago
lirongrossmann
▴ 40
0
votes
0
replies
408
views
NMF in single cell analysis
NMF
ZeiselBrainData
3.8 years ago
sofia.puvogel
• 0
0
votes
0
replies
1.3k
views
Error in NMF estimation
MutationalPatterns
NMF
4.9 years ago
TRASA
• 0
0
votes
7
replies
3.0k
views
nmf function not working
somaticsignatures
NMF
updated 5.4 years ago by
Xin
• 0 • written 5.8 years ago by
aslam.mohammed398
• 0
0
votes
0
replies
781
views
NMF pre-processsing effect on classification
NMF
log2
classification
bioconductor
5.9 years ago • updated 5.8 years ago
Seymoo
• 0
0
votes
1
reply
1.0k
views
SomaticSignatures for Bioconductor 3.6 (R 3.4.3) depends on NMF, which is not available for R 3.4.3
NMF
somaticsignatures
R 3.4.3
updated 6.1 years ago by
shepherl
3.8k • written 6.1 years ago by
samuel.fux
• 0
0
votes
6
replies
2.8k
views
Somaticsignature NMF problem
somaticsignatures
NMF
updated 6.5 years ago by
grimmmmer
• 0 • written 7.2 years ago by
ns
• 0
0
votes
4
replies
2.3k
views
DESeq2, outlier correction, Combat, NMF
deseq2
combat
outliers
NMF
updated 6.9 years ago by
Michael Love
41k • written 6.9 years ago by
noname
• 0
0
votes
0
replies
1.2k
views
Defining metagenes from NMF in methylation array data - next step?
NMF
minfi
8.1 years ago
yura.grabovska
▴ 30
0
votes
2
replies
1.1k
views
coefmap plot - label colors
affy
coefmap
nmf
updated 8.3 years ago by
James W. MacDonald
65k • written 8.3 years ago by
thrabe
• 0
0
votes
1
reply
1.6k
views
SomaticSignatures: negative entries after ComBat adjustment
sva
somaticsignatures
batch effect
nmf
updated 8.4 years ago by
Jeff Leek
▴ 650 • written 8.4 years ago by
kw10
• 0
0
votes
1
reply
1.4k
views
NMF Package error
NMF
bioconductor
R
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
Deepak Tanwar
▴ 10
13 results • Page
1 of 1
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Replies
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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★ 3.2k
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Gordon Smyth
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