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NMF
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5
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5
replies
1.6k
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Running NMF for single cell
NMF
scater
3.5 years ago
lirongrossmann
▴ 40
0
votes
1
reply
1.4k
views
NMF Package error
NMF
bioconductor
R
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
Deepak Tanwar
▴ 10
0
votes
1
reply
1.6k
views
SomaticSignatures: negative entries after ComBat adjustment
sva
somaticsignatures
batch effect
nmf
updated 8.3 years ago by
Jeff Leek
▴ 650 • written 8.3 years ago by
kw10
• 0
0
votes
2
replies
1.1k
views
coefmap plot - label colors
affy
coefmap
nmf
updated 8.2 years ago by
James W. MacDonald
65k • written 8.2 years ago by
thrabe
• 0
0
votes
0
replies
1.1k
views
Defining metagenes from NMF in methylation array data - next step?
NMF
minfi
8.1 years ago
yura.grabovska
▴ 30
0
votes
6
replies
2.7k
views
Somaticsignature NMF problem
somaticsignatures
NMF
updated 6.5 years ago by
grimmmmer
• 0 • written 7.1 years ago by
ns
• 0
0
votes
4
replies
2.3k
views
DESeq2, outlier correction, Combat, NMF
deseq2
combat
outliers
NMF
updated 6.8 years ago by
Michael Love
41k • written 6.8 years ago by
noname
• 0
0
votes
1
reply
1.0k
views
SomaticSignatures for Bioconductor 3.6 (R 3.4.3) depends on NMF, which is not available for R 3.4.3
NMF
somaticsignatures
R 3.4.3
updated 6.1 years ago by
shepherl
3.8k • written 6.1 years ago by
samuel.fux
• 0
0
votes
0
replies
769
views
NMF pre-processsing effect on classification
NMF
log2
classification
bioconductor
5.8 years ago
Seymoo
• 0
0
votes
7
replies
2.9k
views
nmf function not working
somaticsignatures
NMF
updated 5.4 years ago by
Xin
• 0 • written 5.7 years ago by
aslam.mohammed398
• 0
0
votes
0
replies
398
views
NMF in single cell analysis
NMF
ZeiselBrainData
3.7 years ago
sofia.puvogel
• 0
0
votes
0
replies
1.3k
views
Error in NMF estimation
MutationalPatterns
NMF
4.9 years ago
TRASA
• 0
0
votes
1
reply
2.7k
views
NMF installation with current R version
NMF
Biobase
updated 22 months ago by
shepherl
3.8k • written 22 months ago by
Abhishek
• 0
13 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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