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NOISeq
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444
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Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 8 months ago by
ATpoint
★ 4.0k • written 8 months ago by
Rutuja
• 0
1
vote
1
reply
750
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
22 months ago
Pratibha
▴ 10
0
votes
2
replies
905
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 3.3 years ago by
ATpoint
★ 4.0k • written 3.3 years ago by
Themis
• 0
3
votes
6
replies
1.7k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 2.3 years ago by
Michael Love
41k • written 3.6 years ago by
andreia
▴ 10
0
votes
0
replies
671
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
4.7 years ago
ag1805x
▴ 80
0
votes
0
replies
651
views
NOISeq 'readData' not writing correctly
software error
NOISeq
4.8 years ago
jledmondson
• 0
0
votes
1
reply
806
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
4.9 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
946
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
6.0 years ago
Aurora
▴ 20
0
votes
0
replies
982
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
6.2 years ago
aokoro
• 0
0
votes
0
replies
1.5k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
6.6 years ago
Luiz
• 0
0
votes
3
replies
1.5k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
Mau
▴ 50
0
votes
5
replies
3.7k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 7.0 years ago by
Michael Love
41k • written 7.0 years ago by
glmazzo
▴ 10
0
votes
0
replies
1.3k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
8.5 years ago
lina.faller
▴ 10
0
votes
0
replies
1.0k
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
11.2 years ago
Guest User
★ 13k
0
votes
2
replies
2.7k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 11.5 years ago by
Dan Tenenbaum
★ 8.2k • written 11.5 years ago by
Guest User
★ 13k
0
votes
4
replies
2.0k
views
NOISeq installation error
NOISeq
NOISeq
updated 11.6 years ago by
Sean Davis
21k • written 11.6 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.1k
views
NOISeq-real input parameters
NOISeq
NOISeq
12.1 years ago
Guest User
★ 13k
17 results • Page
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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