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NOISeq
•
reset
3
votes
6
replies
1.6k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 2.2 years ago by
Michael Love
41k • written 3.5 years ago by
andreia
▴ 10
1
vote
1
reply
721
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
22 months ago • updated 21 months ago
Pratibha
▴ 10
0
votes
2
replies
2.7k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 11.5 years ago by
Dan Tenenbaum
★ 8.2k • written 11.5 years ago by
Guest User
★ 13k
0
votes
0
replies
993
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
11.1 years ago
Guest User
★ 13k
0
votes
0
replies
1.2k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
8.4 years ago
lina.faller
• 0
0
votes
5
replies
3.6k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 6.9 years ago by
Michael Love
41k • written 6.9 years ago by
glmazzo
▴ 10
0
votes
3
replies
1.4k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 6.6 years ago by
James W. MacDonald
65k • written 6.6 years ago by
Mau
▴ 50
0
votes
0
replies
1.5k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
6.5 years ago
Luiz
• 0
0
votes
0
replies
1.1k
views
NOISeq-real input parameters
NOISeq
NOISeq
12.0 years ago
Guest User
★ 13k
0
votes
0
replies
918
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
5.9 years ago
Aurora
▴ 20
0
votes
1
reply
776
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
4.8 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
620
views
NOISeq 'readData' not writing correctly
software error
NOISeq
4.7 years ago
jledmondson
• 0
0
votes
0
replies
659
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
4.6 years ago
ag1805x
▴ 80
0
votes
2
replies
890
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 3.3 years ago by
ATpoint
★ 4.0k • written 3.3 years ago by
Themis
• 0
0
votes
1
reply
407
views
Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
Rutuja
• 0
0
votes
0
replies
966
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
6.2 years ago
aokoro
• 0
0
votes
4
replies
1.9k
views
NOISeq installation error
NOISeq
NOISeq
updated 11.5 years ago by
Sean Davis
21k • written 11.5 years ago by
Fatemehsadat Seyednasrollah
▴ 260
17 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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