Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
NanoString
•
reset
0
votes
0
replies
1.1k
views
Trying to use a NanoString expression set with batch effects to do GSVA
GSVA
Normalization
BatchEffect
GSVAdata
NanoString
23 months ago
Zhijie
• 0
0
votes
3
replies
2.7k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet
Assay
NanoString
Error
Data
updated 2.4 years ago by
James W. MacDonald
67k • written 2.4 years ago by
junli1988
• 0
2
votes
3
replies
2.0k
views
Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
NanoNormIter
DifferentialExpression
Housekeeping
DESeq2
NanoString
updated 2.9 years ago by
Michael Love
43k • written 2.9 years ago by
argonvibio
• 0
1
vote
5
replies
2.1k
views
how to plot multiple RLEs on same plot?
plotRLE
Nanostring
RUVSeq
DESEQ2
updated 4 months ago by
BioinfGuru
▴ 70 • written 3.5 years ago by
xiaofeiwang18266
▴ 50
3
votes
6
replies
2.2k
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 13 months ago by
georgersmith
• 0 • written 5.4 years ago by
lim6432
▴ 50
0
votes
1
reply
1.9k
views
Application of RUV to a small Nanostring dataset
RUV
Nanostring
RUV-III
updated 4.6 years ago by
hermidalc
▴ 20 • written 5.4 years ago by
raf4
▴ 30
0
votes
9
replies
1.8k
views
DESeq2 with nanostring data
deseq2
nanostring
5.0 years ago
acs1990
▴ 10
0
votes
4
replies
1.2k
views
Setting up contrasts with 'limma', patient data, small number of repeats
limma
nanostring
contrasts
updated 5.2 years ago by
Gordon Smyth
52k • written 5.2 years ago by
uridavid.akavia
• 0
16
votes
40
replies
10k
views
Can NanoString data be analyzed using DESeq2?
NanoString
Differential Expressed Genes Analysis
DESeq2
updated 2.9 years ago by
Clara
▴ 10 • written 5.4 years ago by
lim6432
▴ 50
1
vote
1
reply
1.7k
views
GSVA with NanoString nCounter data
GSVA
Nanostring
6.4 years ago • updated 5.7 years ago
SB
• 0
0
votes
5
replies
1.5k
views
NanoStringDiff analysis with confounding factors
differential gene expression
nanostring
confounding factors
updated 6.0 years ago by
James W. MacDonald
67k • written 6.0 years ago by
Guillaume Robert
• 0
1
vote
6
replies
2.3k
views
How to access normalized data in the NanoStringDiff package?
nanostringdiff
nanostring
NanoStringDiff
updated 6.5 years ago by
James W. MacDonald
67k • written 6.5 years ago by
casey.rimland
▴ 170
9
votes
13
replies
6.3k
views
DESeq2 on NanoString Data
deseq2
nanostring
updated 6.5 years ago by
Michael Love
43k • written 6.5 years ago by
casey.rimland
▴ 170
1
vote
1
reply
1.2k
views
DESeq2 confounding cartridge
deseq2
confounders
nanostring
rnaseq
differential gene expression
updated 6.7 years ago by
Michael Love
43k • written 6.7 years ago by
kim.malek88
• 0
0
votes
0
replies
1.5k
views
design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring
NanoStringDiff
design and contrast matrix
differential gene expression
ncounter
7.4 years ago
c.kohler
• 0
3
votes
8
replies
3.8k
views
Using DESeq2 with Nanostring data (for VST only)
deseq2
variancestabilizingtransformation
nanostring
updated 7.7 years ago by
Michael Love
43k • written 7.7 years ago by
johnmcma
▴ 10
2
votes
0
replies
2.1k
views
NanoString Data Normalization Revisited
nanostring
normalization
9.2 years ago
alakatos
▴ 130
24
votes
12
replies
13k
views
Nanostring analysis with limma
nanostring
limma
updated 9.6 years ago by
ker61
▴ 20 • written 9.6 years ago by
mali salmon
▴ 370
18 results • Page
1 of 1
Recent ...
Replies
Answer: Margins for gene_set_enrichment_plot
by
Leonardo Collado Torres
★ 1.1k
Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 20
Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…
Comment: Help using rtracklayer for gene ID extraction
by
James W. MacDonald
67k
Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …
Answer: Need new version : tx2gene.gencode.v47.csv
by
Guido Hooiveld
★ 4.1k
Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …
Votes
Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
Awards
• All
Popular Question
to
shepherl
4.1k
Popular Question
to
Lluís Revilla Sancho
▴ 760
Popular Question
to
giulia.gentile
▴ 10
Popular Question
to
mat149
▴ 80
Popular Question
to
Yang Shi
▴ 10
Locations
• All
The city by the bay,
20 minutes ago
Australia,
37 minutes ago
Bangladesh,
1 hour ago
Switzerland,
1 hour ago
Netherlands,
1 hour ago
Traffic: 236 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6