Biostar NanoString

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296

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NanoNormIter DifferentialExpression Housekeeping DESeq2 NanoString

updated 3 months ago by Michael Love 36k • written 3 months ago by argonvibio • 0

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372

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plotRLE Nanostring RUVSeq DESEQ2

10 months ago xiaofeiwang18266 ▴ 40

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859

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NanoStringDiff NanoString nCounter DE analysis

updated 11 months ago by anastazie.d ▴ 20 • written 2.8 years ago by lim6432 ▴ 50

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765

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RUV Nanostring RUV-III

updated 2.1 years ago by hermidalc ▴ 10 • written 2.8 years ago by raf4 ▴ 20

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653

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deseq2 nanostring

2.4 years ago acs1990 ▴ 10

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406

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limma nanostring contrasts

updated 2.6 years ago by Gordon Smyth 45k • written 2.6 years ago by uridavid.akavia • 0

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3.6k

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NanoString Differential Expressed Genes Analysis DESeq2

updated 4 months ago by Clara • 0 • written 2.8 years ago by lim6432 ▴ 50

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783

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GSVA Nanostring

3.8 years ago • updated 3.1 years ago SB • 0

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636

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differential gene expression nanostring confounding factors

updated 3.4 years ago by James W. MacDonald 59k • written 3.4 years ago by Guillaume Robert • 0

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1.0k

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nanostringdiff nanostring NanoStringDiff

updated 3.9 years ago by James W. MacDonald 59k • written 3.9 years ago by casey.rimland ▴ 140

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3.0k

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deseq2 nanostring

updated 3.9 years ago by Michael Love 36k • written 3.9 years ago by casey.rimland ▴ 140

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669

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deseq2 confounders nanostring rnaseq differential gene expression

updated 4.1 years ago by Michael Love 36k • written 4.1 years ago by kim.malek88 • 0

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808

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

4.8 years ago c.kohler • 0

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2.5k

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deseq2 variancestabilizingtransformation nanostring

updated 5.1 years ago by Michael Love 36k • written 5.1 years ago by johnmcma ▴ 10

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1.5k

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nanostring normalization

6.6 years ago alakatos ▴ 120

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9.9k

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nanostring limma

updated 7.0 years ago by ker61 ▴ 20 • written 7.1 years ago by mali salmon ▴ 350

16 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by karenserrano • 0

Hi Johannes, Could I request the same EnsDb creation for Medicago truncatula? Thank you very much, Karen

Answer: EnrichGO not working with db created from annotationhub by Guido Hooiveld ★ 3.2k

Did you notice the first message that was returned after you ran `enrichGO()`? Thus: `--> No gene can be mapped....` This basically means…

Comment: DiffBind GreyListChIP error: Error: BiocParallel errors by ksong • 0

Hello my friends, I have exactly the same issue. May I ask if you have already solve this problem? I have tried `library(BiocParallel) regi…

Comment: cellCounts() function floating point error by Wei Shi ★ 3.3k

Yes we are currently working on generating a small example for cellCounts.

Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU by ksong • 0

Hi Dr Sudbery, yes I found looking at the coverage in IGV helps a lot. I did find some differences between CDS and UTR and between samples.…

Votes

Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU

C: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o

Comment: Diffbind dba$binding slot finding Chr21 for an MM10 dataset

Answer: Handling NA values in limma's voom design matrix

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