Bioconductor NanoString

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GSVA Normalization BatchEffect GSVAdata NanoString

3.0 years ago Zhijie • 0

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3.4k

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ExpressionSet Assay NanoString Error Data

updated 3.5 years ago by James W. MacDonald 68k • written 3.5 years ago by junli1988 • 0

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NanoNormIter DifferentialExpression Housekeeping DESeq2 NanoString

updated 4.0 years ago by Michael Love 43k • written 4.0 years ago by argonvibio • 0

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2.7k

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plotRLE Nanostring RUVSeq DESEQ2

updated 17 months ago by BioinfGuru ▴ 70 • written 4.6 years ago by xiaofeiwang18266 ▴ 60

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deseq2 nanostring

6.1 years ago acs1990 ▴ 10

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limma nanostring contrasts

updated 6.3 years ago by Gordon Smyth 53k • written 6.3 years ago by uridavid.akavia • 0

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RUV Nanostring RUV-III

updated 5.7 years ago by hermidalc ▴ 20 • written 6.5 years ago by raf4 ▴ 30

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NanoStringDiff NanoString nCounter DE analysis

updated 2.2 years ago by georgersmith • 0 • written 6.5 years ago by lim6432 ▴ 60

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NanoString Differential Expressed Genes Analysis DESeq2

updated 4 months ago by James W. MacDonald 68k • written 6.5 years ago by lim6432 ▴ 60

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differential gene expression nanostring confounding factors

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by Guillaume Robert • 0

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GSVA Nanostring

7.5 years ago • updated 6.8 years ago SB • 0

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7.5k

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deseq2 nanostring

updated 4 months ago by Michael Love 43k • written 7.6 years ago by casey.rimland ▴ 170

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nanostringdiff nanostring NanoStringDiff

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by casey.rimland ▴ 170

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deseq2 confounders nanostring rnaseq differential gene expression

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by kim.malek88 • 0

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

8.5 years ago c.kohler • 0

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deseq2 variancestabilizingtransformation nanostring

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by johnmcma ▴ 10

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nanostring normalization

10.3 years ago alakatos ▴ 130

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nanostring limma

updated 10.7 years ago by ker61 ▴ 20 • written 10.7 years ago by mali salmon ▴ 370

18 results • Page 1 of 1

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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by ATpoint ★ 5.0k

Yes, still it's not reproducible, yet hard to debug. I cannot reproduce myself either.

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening in a clean install

Comment: limpa analysis advice by Gordon Smyth 53k

Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …

Comment: limpa analysis advice by SamGG ▴ 360

Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…

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Comment: limpa analysis advice

Answer: When to use edgeR or limma

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