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NanoStringDiff
•
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1
vote
7
replies
1.0k
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
4.2 years ago
stephen.pollo
• 0
5
votes
7
replies
1.5k
views
Nanostringdiff - defining contrast values for blocking variables in glm
limma
edgeR
DESeq2
NanoStringDiff
updated 2.5 years ago by
James W. MacDonald
65k • written 2.6 years ago by
reberya
• 0
3
votes
6
replies
1.9k
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 4 months ago by
georgersmith
• 0 • written 4.6 years ago by
lim6432
▴ 50
1
vote
6
replies
1.9k
views
How to access normalized data in the NanoStringDiff package?
nanostringdiff
nanostring
NanoStringDiff
updated 5.8 years ago by
James W. MacDonald
65k • written 5.8 years ago by
casey.rimland
▴ 150
3
votes
3
replies
1.4k
views
NanoStringDiff counts not numeric
NanoStringDiff
updated 9 weeks ago by
pjanas
• 0 • written 4.9 years ago by
noelleenright
▴ 10
0
votes
2
replies
840
views
NanoStringDiff correction for variation between patient
NanoStringDiff
GLM
Gene expression
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
Guillaume Robert
• 0
0
votes
2
replies
774
views
Nanostring data differential expression analysis: limma or DESeq2?
DESeq2
NanoStringDiff
limma
10 months ago
pg45863
▴ 10
3
votes
2
replies
931
views
R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" generated?
Nan
NanoStringDiff
2.7 years ago
choijamts
• 0
0
votes
2
replies
489
views
NanoStringDiff contrast vectors
NanoStringDiff
updated 15 months ago by
James W. MacDonald
65k • written 15 months ago by
Paraskevi
• 0
1
vote
1
reply
868
views
NanoStringDiff Not Recognized as Numeric
Bioconductor
Transcriptomics
NanoStringDiff
updated 3.4 years ago by
Laurent Gatto
1.6k • written 3.4 years ago by
Pedro
▴ 10
0
votes
1
reply
574
views
Micro Array GEO data analysis
GEOquery
MicroarrayData
Normalization
Microarray
NanoStringDiff
updated 14 months ago by
James W. MacDonald
65k • written 14 months ago by
Aleksandra
• 0
0
votes
0
replies
630
views
NanoStringDiff - housekeeping genes variation
NanoStringDiff
3.0 years ago
YM
• 0
0
votes
0
replies
1.3k
views
design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring
NanoStringDiff
design and contrast matrix
differential gene expression
ncounter
6.7 years ago
c.kohler
• 0
0
votes
0
replies
527
views
NanoStringDiff
DifferentialExpression
NanoStringDiff
2.3 years ago
sanrie10
• 0
0
votes
0
replies
745
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
10 months ago
pg45863
▴ 10
15 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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