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Adding chromosome numbers to the respective gene ids of DESeq2 output file
NewWave hgu133a2.db
updated 9 weeks ago by • 0 • written 2.3 years ago by • 0
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773
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Statistical test
NewWave
written 2.1 years ago by • 0
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Error in (function (classes, fdef, mtable) : Function 'raster' tag 'logical' cannot find an inheritance method
NewWave
updated 2.1 years ago by 4.3k • written 2.1 years ago by • 0
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error running exp2grn
NewWave
updated 2.3 years ago by ▴ 40 • written 2.4 years ago by • 0
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898
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featureCounts error Assertion failed: (NULL == pairer -> bam_margin_table -> appendix2), function SAM_pairer_finish_margin_table, file input-files.c,…
NewWave
2.3 years ago Kilian • 0
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Spam: 7z password remover tool
mgu74bv2cdf NewWave hgu133a2.db
2.6 years ago roma 0
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Spam: ost to pst migration software
mgu74bv2cdf NewWave hgu133a2.db
2.6 years ago roma 0
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1.4k
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Extracting DEG from topTags
NewWave
updated 2.6 years ago by 53k • written 2.6 years ago by • 0
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How to use txtimport and do differential expression
NewWave
updated 2.6 years ago by 68k • written 2.6 years ago by • 0
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Comment: chemmineOB install help by Jeremy • 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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