Bioconductor NewWave

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NewWave

updated 21 months ago by Gordon Smyth 52k • written 21 months ago by liujy4 • 0

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NewWave

18 months ago Kilian • 0

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633

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NewWave

updated 15 months ago by shepherl 4.1k • written 15 months ago by 1135296741 • 0

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618

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NewWave

updated 21 months ago by James W. MacDonald 68k • written 21 months ago by SuASNAVASCH • 0

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595

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NewWave

updated 18 months ago by Fabricio Almeida-Silva ▴ 40 • written 19 months ago by adriana • 0

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NewWave hgu133a2.db

updated 18 months ago by ATpoint ★ 4.8k • written 18 months ago by roy23032 • 0

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NewWave

written 15 months ago by mario • 0

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mgu74bv2cdf NewWave hgu133a2.db

20 months ago roma 0

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mgu74bv2cdf NewWave hgu133a2.db

20 months ago roma 0

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Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

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Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

Answer: Merging annotation with differential expression output

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