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Join the Technical Advisory Board
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11 months ago
Maria Doyle
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Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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Matthew Ritchie
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Matthew Ritchie
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shepherl
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DESeq2 multiple groups comparison issues, incorrect log2FC results in a small proportion of genes
deseq2
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Michael Love
41k • written 3.5 years ago by
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BridgeDbR devel package upgraded to BridgeDb 3
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Project-wide Code of Conduct statement for Bioconductor
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3.5 years ago
Laurent Gatto
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shepherl
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shepherl
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ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
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shepherl
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shepherl
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shepherl
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shepherl
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shepherl
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Johannes Rainer
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kayla.interdonato
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kayla.interdonato
▴ 160
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shepherl
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4.0 years ago • updated 3.9 years ago
shepherl
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4.0 years ago
Martin Morgan
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shepherl
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Matthew Ritchie
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4.1 years ago • updated 3.8 years ago
shepherl
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Final List of Deprecated Packages for Bioc3.11
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kayla.interdonato
▴ 160 • written 4.1 years ago by
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728
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4.1 years ago
shepherl
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shepherl
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kayla.interdonato
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Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up question. Following up in In your [1-2-3 article][1], you say that > "... the …
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Comment: Error retrieving ensembl gene id using biomaRt...
by
James W. MacDonald
65k
Or that. ;-D
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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