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News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
3.1 years ago • updated 2.8 years ago
shepherl
3.1k
4
votes
9
replies
2.0k
views
News:
Ensembl release 84 is out!
ensembl
mart
release84
biomart
ensembl release
News
updated 6.1 years ago by
arielpaulson
▴ 20 • written 6.2 years ago by
Thomas Maurel
▴ 790
0
votes
3
replies
396
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 2.0 years ago by
kayla.interdonato
140 • written 2.1 years ago by
shepherl
3.1k
1
vote
3
replies
660
views
News:
European Bioconductor meeting 2019, 9 - 10 December in Brussels, Belgium
conference
EuroBioc
News
2.6 years ago • updated 2.5 years ago
Laurent Gatto
1.5k
7
votes
4
replies
1.2k
views
News:
Bioconductor 3.7 is released
bioconductor
release
News
updated 4.0 years ago by
funnyjokes1.com
• 0 • written 4.0 years ago by
Valerie Obenchain
★ 6.7k
1
vote
6
replies
2.0k
views
how to create a NEWS file in R package
news
package
updated 3.8 years ago by
ahlammajid352
• 0 • written 3.8 years ago by
xyluo1991
• 0
6
votes
6
replies
2.4k
views
News:
Bioconductor Git/GitHub Mirrors
git
github
git-svn bridge
subversion
News
updated 6.9 years ago by
Guangchuang Yu
★ 1.2k • written 6.9 years ago by
Dan Tenenbaum
★ 8.2k
9
votes
8
replies
5.7k
views
News:
new package `ggtree` in devel branch
ggtree
phylogenetic
News
updated 7.2 years ago by
remi.tournebize
▴ 10 • written 7.3 years ago by
Guangchuang Yu
★ 1.2k
7
votes
5
replies
2.0k
views
News:
European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
conference
workshop
News
updated 6.6 years ago by
Laurent Gatto
1.5k • written 6.7 years ago by
Mark Dunning
★ 1.1k
0
votes
2
replies
680
views
News:
Single Package Builder / New Package Submission
new submission
build report
packages
News
4.5 years ago
shepherl
3.1k
4
votes
11
replies
958
views
News:
Bioconductor 3.8 is released
bioconductor
news
release
News
updated 3.4 years ago by
restat110
• 0 • written 3.5 years ago by
Valerie Obenchain
★ 6.7k
0
votes
2
replies
1.1k
views
News:
ChIPpeakAnno::getAnnotation get Exons
chippeakanno
News
updated 7.1 years ago by
Ou, Jianhong
★ 1.3k • written 7.2 years ago by
Julie Zhu
★ 4.3k
1
vote
2
replies
714
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
19 months ago
shepherl
3.1k
0
votes
2
replies
578
views
News:
List of Deprecated Packages for Bioc3.7
deprecate
News
updated 4.5 years ago by
flipdiving2017
• 0 • written 4.5 years ago by
shepherl
3.1k
5
votes
5
replies
1.2k
views
News:
Ensembl 88 is out!
ensembl
ensembl mart
biomart
e!88
News
5.1 years ago
Thomas Maurel
▴ 790
0
votes
2
replies
607
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
2.6 years ago • updated 2.5 years ago
shepherl
3.1k
20
votes
13
replies
2.1k
views
News:
markdown is coming to the support site
markdown
News
4.8 years ago • updated 4.2 years ago
Lucas Schiffer
▴ 240
9
votes
4
replies
2.1k
views
News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
subjunc
ercc
News
7.5 years ago
Wei Shi
★ 3.4k
4
votes
1
reply
3.2k
views
News:
Nominations for Bioconductor Awards!
Bioc2020
Bioconductor
Awards
Recognition
News
2.1 years ago • updated 23 months ago
shepherl
3.1k
0
votes
1
reply
326
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
2.4 years ago
shepherl
3.1k
1
vote
1
reply
384
views
News:
Issues with annotation packages
annotation
news
release
News
2.0 years ago
kayla.interdonato
140
0
votes
1
reply
385
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
3.0 years ago
shepherl
3.1k
1
vote
3
replies
665
views
News:
Initial List of Deprecated Package Bioc 3.9
package
deprecate
release
News
updated 3.5 years ago by
Wolfgang Huber
13k • written 3.5 years ago by
shepherl
3.1k
5
votes
2
replies
812
views
News:
BioC2019 talk/workshop/scholarship submission deadline MARCH 15
BioC2019
News
updated 3.2 years ago by
Julie Zhu
★ 4.3k • written 3.2 years ago by
Levi Waldron
1.1k
0
votes
1
reply
418
views
News:
Deadline for devel branch 3.9 to pass R CMD build and R CMD check
release
devel
deadline
freeze
News
3.1 years ago
shepherl
3.1k
0
votes
1
reply
479
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
2.8 years ago • updated 2.7 years ago
shepherl
3.1k
0
votes
4
replies
469
views
News:
BridgeDb build fails due to website unavailability
bridgedbr
News
2.4 years ago • updated 2.1 years ago
egon.willighagen
▴ 10
0
votes
1
reply
455
views
News:
Community engagement and outreach award
bioconductor
bioc2020
award
community
News
written 23 months ago by
shepherl
3.1k
0
votes
1
reply
344
views
News:
New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release
package submission
docker
deadline
News
2.2 years ago • updated 2.1 years ago
shepherl
3.1k
0
votes
1
reply
619
views
News:
Final List of Deprecated Packages for Bioc3.7
deprecate
package
release
News
4.1 years ago
shepherl
3.1k
0
votes
1
reply
768
views
News:
OrgDbs in AnnotationHub
annotationhub
orgdb
News
4.5 years ago
shepherl
3.1k
0
votes
1
reply
546
views
News:
Single Package Builder Updates and Testing
packages
review
spb
News
4.4 years ago
shepherl
3.1k
10
votes
3
replies
2.3k
views
News:
Updates to BiocStyle formatting
BiocStyle
vignettes
rmarkdown
latex
News
4.8 years ago • updated 4.7 years ago
Andrzej Oleś
▴ 750
0
votes
1
reply
705
views
News:
List of Deprecated Packages for Bioc3.6
deprecate
News
4.7 years ago
shepherl
3.1k
4
votes
1
reply
2.0k
views
News:
Bioconductor git transition BETA phase starts now.
git
svn
infrastructure
bioconductor
News
4.9 years ago
nitesh.turaga
140
0
votes
1
reply
1.0k
views
News:
Plotly uprading issue in ChAMP package
ChAMP
Epigenetics
plotly
Shiny
GUI
News
5.5 years ago • updated 5.3 years ago
Yuan Tian
▴ 90
0
votes
1
reply
777
views
News:
Exploiting computational immunology to understand the immune system| Symposium
computational biology
immunology
bioinformatics
symposium
RIMLS
News
updated 5.4 years ago by
Maxim.Baranov
• 0 • written 5.4 years ago by
maximbaranov23
• 0
0
votes
1
reply
1.3k
views
News:
Bug in ChAMP package champ.SVD() function
champ
methylation
450k
SVD
EPIC
News
5.7 years ago
Yuan Tian
▴ 90
1
vote
1
reply
1.0k
views
News:
CRISPRseek: generate gRNAs in bed format, useScore argument
CRISPRseek
News
updated 7.6 years ago by
orkanilbay
• 0 • written 7.6 years ago by
Julie Zhu
★ 4.3k
3
votes
1
reply
846
views
News:
Bioconductor Mendeley Group
bioconductor
publication
News
updated 5.7 years ago by
taniaak062
• 0 • written 5.7 years ago by
Sean Davis
21k
4
votes
1
reply
1.2k
views
News:
Advanced R programming course - EMBL Heidelberg, 3-4 April 2017
course
workshop
News
5.3 years ago • updated 5.2 years ago
Laurent Gatto
1.5k
9
votes
7
replies
2.2k
views
News:
Conference: BioC 2016: Where Software and Biology Connect, Stanford, 24-26 June
BioC2016
Conference
News
updated 5.9 years ago by
shepherl
3.1k • written 6.3 years ago by
Martin Morgan
25k
5
votes
1
reply
2.6k
views
News:
Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication
workflows
benchmark
teaching
News
updated 6.1 years ago by
thomas.ingraham
▴ 10 • written 6.1 years ago by
Wolfgang Huber
13k
5
votes
2
replies
1.8k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 6.8 years ago by
Sonali Arora
▴ 380 • written 6.8 years ago by
Thomas Maurel
▴ 790
0
votes
2
replies
975
views
News:
Looking to attend to a Bioconductor course for biologists in Europe
course
News
updated 7.0 years ago by
andrew.j.skelton73
▴ 360 • written 7.0 years ago by
laianavarromartin
▴ 20
9
votes
1
reply
1.7k
views
News:
Ensembl release 80 is out!
biomart
Ensembl
zebrafish
Rat
1000 genomes phase 3
News
updated 7.0 years ago by
Sonali Arora
▴ 380 • written 7.0 years ago by
Thomas Maurel
▴ 790
8
votes
10
replies
1.3k
views
News:
Bioconductor 3.2 is released!
news
News
updated 6.6 years ago by
JunLVI
▴ 40 • written 6.6 years ago by
Dan Tenenbaum
★ 8.2k
3
votes
5
replies
760
views
News:
sorted the results of function dba.report in DiffBind R package
diffbind
News
updated 3.4 years ago by
Rory Stark
★ 4.4k • written 3.4 years ago by
bioqianyang
• 0
1
vote
1
reply
1.1k
views
News:
New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
computational biology
bioinformatics
teaching
master
News
updated 5.9 years ago by
Chloe2013025
• 0 • written 5.9 years ago by
enridomenici
▴ 10
10
votes
15
replies
2.0k
views
News:
BioC 2017: Where Software and Biology Connect, 26 / 27 - 28 July, Boston, MA
conference
bioc2017
News
5.2 years ago • updated 4.8 years ago
Martin Morgan
25k
50 results • Page
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Comment: TPM data Differential expression analysis
by
hnthirim
▴ 10
Hi @gordonsmyth, Question on your above answer: I have logTPM normalized data. Can I perform DE analysis using it on EdgeR, instead of in…
Comment: rtracklayer S.h
by
gibran
• 0
Thanks, much appreciated. So I think this approach actually gets binaries and I'm not sure how to isolate the problem I was experiencing as…
Comment: DESeq2, Calculate the size factor by using median-of-ratio
by
KEREN
• 0
Hi Michael, thank you for you reply. My concern here mainly focus on the high variances in samples of condition "mESC_mRNA_WT". I observed…
Comment: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro
by
Rory Stark
★ 4.4k
I agree the documentation could be clearer -- it took me a while to understand what it said so I could address your issue!
Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro
by
chrarnold
• 0
Thanks a lot for your quick reply, it is very appreciated! Indeed, with your 2 suggested modifications, I can again reproduce the results f…
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Answer: rtracklayer S.h
Answer: rtracklayer S.h
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
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