Showing : News • reset
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News: Final List of Deprecated Package Bioc 3.9
deprecation release software experimentData News
3.1 years ago • updated 2.8 years ago shepherl 3.1k
4
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9
replies
2.0k
views
News: Ensembl release 84 is out!
ensembl mart release84 biomart ensembl release News
updated 6.1 years ago by ▴ 20 • written 6.2 years ago by ▴ 790
0
votes
3
replies
396
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News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 2.0 years ago by 140 • written 2.1 years ago by 3.1k
1
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3
replies
660
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News: European Bioconductor meeting 2019, 9 - 10 December in Brussels, Belgium
conference EuroBioc News
2.6 years ago • updated 2.5 years ago Laurent Gatto 1.5k
7
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4
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1.2k
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News: Bioconductor 3.7 is released
bioconductor release News
updated 4.0 years ago by • 0 • written 4.0 years ago by ★ 6.7k
1
vote
6
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2.0k
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how to create a NEWS file in R package
news package
updated 3.8 years ago by • 0 • written 3.8 years ago by • 0
6
votes
6
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2.4k
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News: Bioconductor Git/GitHub Mirrors
git github git-svn bridge subversion News
updated 6.9 years ago by ★ 1.2k • written 6.9 years ago by ★ 8.2k
9
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8
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5.7k
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News: new package `ggtree` in devel branch
ggtree phylogenetic News
updated 7.2 years ago by ▴ 10 • written 7.3 years ago by ★ 1.2k
7
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5
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2.0k
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News: European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers conference workshop News
updated 6.6 years ago by 1.5k • written 6.7 years ago by ★ 1.1k
0
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2
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680
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News: Single Package Builder / New Package Submission
new submission build report packages News
4.5 years ago shepherl 3.1k
4
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11
replies
958
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News: Bioconductor 3.8 is released
bioconductor news release News
updated 3.4 years ago by • 0 • written 3.5 years ago by ★ 6.7k
0
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2
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1.1k
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News: ChIPpeakAnno::getAnnotation get Exons
chippeakanno News
updated 7.1 years ago by ★ 1.3k • written 7.2 years ago by ★ 4.3k
1
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2
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714
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News: Final List of Deprecated Packages for Bioc3.12
annotation software experimentdata deprecated News
19 months ago shepherl 3.1k
0
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2
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578
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News: List of Deprecated Packages for Bioc3.7
deprecate News
updated 4.5 years ago by • 0 • written 4.5 years ago by 3.1k
5
votes
5
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1.2k
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News: Ensembl 88 is out!
ensembl ensembl mart biomart e!88 News
5.1 years ago Thomas Maurel ▴ 790
0
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2
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607
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News: Final List of Deprecated Packages for Bioc3.10
annotation experimentdata deprecation release software News
2.6 years ago • updated 2.5 years ago shepherl 3.1k
20
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13
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2.1k
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News: markdown is coming to the support site
markdown News
4.8 years ago • updated 4.2 years ago Lucas Schiffer ▴ 240
9
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4
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2.1k
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News: Experimental data package 'seqc'
seqc rsubread featurecounts subjunc ercc News
7.5 years ago Wei Shi ★ 3.4k
4
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1
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3.2k
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News: Nominations for Bioconductor Awards!
Bioc2020 Bioconductor Awards Recognition News
2.1 years ago • updated 23 months ago shepherl 3.1k
0
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1
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326
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News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
2.4 years ago shepherl 3.1k
1
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1
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384
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News: Issues with annotation packages
annotation news release News
2.0 years ago kayla.interdonato 140
0
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1
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385
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News: Initial List of Deprecated Packages Bioc 3.10
software experimentdata release deprecation annotation News
3.0 years ago shepherl 3.1k
1
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3
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665
views
News: Initial List of Deprecated Package Bioc 3.9
package deprecate release News
updated 3.5 years ago by 13k • written 3.5 years ago by 3.1k
5
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2
replies
812
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News: BioC2019 talk/workshop/scholarship submission deadline MARCH 15
BioC2019 News
updated 3.2 years ago by ★ 4.3k • written 3.2 years ago by 1.1k
0
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1
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418
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News: Deadline for devel branch 3.9 to pass R CMD build and R CMD check
release devel deadline freeze News
3.1 years ago shepherl 3.1k
0
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1
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479
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News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software deprecation release News
2.8 years ago • updated 2.7 years ago shepherl 3.1k
0
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4
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469
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News: BridgeDb build fails due to website unavailability
bridgedbr News
2.4 years ago • updated 2.1 years ago egon.willighagen ▴ 10
0
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1
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455
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News: Community engagement and outreach award
bioconductor bioc2020 award community News
written 23 months ago by 3.1k
0
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1
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344
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News: New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release package submission docker deadline News
2.2 years ago • updated 2.1 years ago shepherl 3.1k
0
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1
reply
619
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News: Final List of Deprecated Packages for Bioc3.7
deprecate package release News
4.1 years ago shepherl 3.1k
0
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1
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768
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News: OrgDbs in AnnotationHub
annotationhub orgdb News
4.5 years ago shepherl 3.1k
0
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1
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546
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News: Single Package Builder Updates and Testing
packages review spb News
4.4 years ago shepherl 3.1k
10
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3
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2.3k
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News: Updates to BiocStyle formatting
BiocStyle vignettes rmarkdown latex News
4.8 years ago • updated 4.7 years ago Andrzej Oleś ▴ 750
0
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1
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705
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News: List of Deprecated Packages for Bioc3.6
deprecate News
4.7 years ago shepherl 3.1k
4
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1
reply
2.0k
views
News: Bioconductor git transition BETA phase starts now.
git svn infrastructure bioconductor News
4.9 years ago nitesh.turaga 140
0
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1
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1.0k
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News: Plotly uprading issue in ChAMP package
ChAMP Epigenetics plotly Shiny GUI News
5.5 years ago • updated 5.3 years ago Yuan Tian ▴ 90
0
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777
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News: Exploiting computational immunology to understand the immune system| Symposium
computational biology immunology bioinformatics symposium RIMLS News
updated 5.4 years ago by • 0 • written 5.4 years ago by • 0
0
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1
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1.3k
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News: Bug in ChAMP package champ.SVD() function
champ methylation 450k SVD EPIC News
5.7 years ago Yuan Tian ▴ 90
1
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1
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1.0k
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News: CRISPRseek: generate gRNAs in bed format, useScore argument
CRISPRseek News
updated 7.6 years ago by • 0 • written 7.6 years ago by ★ 4.3k
3
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1
reply
846
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News: Bioconductor Mendeley Group
bioconductor publication News
updated 5.7 years ago by • 0 • written 5.7 years ago by 21k
4
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1
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1.2k
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News: Advanced R programming course - EMBL Heidelberg, 3-4 April 2017
course workshop News
5.3 years ago • updated 5.2 years ago Laurent Gatto 1.5k
9
votes
7
replies
2.2k
views
News: Conference: BioC 2016: Where Software and Biology Connect, Stanford, 24-26 June
BioC2016 Conference News
updated 5.9 years ago by 3.1k • written 6.3 years ago by 25k
5
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1
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2.6k
views
News: Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication workflows benchmark teaching News
updated 6.1 years ago by ▴ 10 • written 6.1 years ago by 13k
5
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2
replies
1.8k
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News: Ensembl release 81 is out!
human mouse GRCh38 biomart Ensembl News
updated 6.8 years ago by ▴ 380 • written 6.8 years ago by ▴ 790
0
votes
2
replies
975
views
News: Looking to attend to a Bioconductor course for biologists in Europe
course News
updated 7.0 years ago by ▴ 360 • written 7.0 years ago by ▴ 20
9
votes
1
reply
1.7k
views
News: Ensembl release 80 is out!
biomart Ensembl zebrafish Rat 1000 genomes phase 3 News
updated 7.0 years ago by ▴ 380 • written 7.0 years ago by ▴ 790
8
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10
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1.3k
views
News: Bioconductor 3.2 is released!
news News
updated 6.6 years ago by ▴ 40 • written 6.6 years ago by ★ 8.2k
3
votes
5
replies
760
views
News: sorted the results of function dba.report in DiffBind R package
diffbind News
updated 3.4 years ago by ★ 4.4k • written 3.4 years ago by • 0
1
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1
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1.1k
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News: New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
computational biology bioinformatics teaching master News
updated 5.9 years ago by • 0 • written 5.9 years ago by ▴ 10
10
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15
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2.0k
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News: BioC 2017: Where Software and Biology Connect, 26 / 27 - 28 July, Boston, MA
conference bioc2017 News
5.2 years ago • updated 4.8 years ago Martin Morgan 25k
50 results • Page 1 of 1
Recent ...
Replies
Comment: TPM data Differential expression analysis by hnthirim ▴ 10
Hi @gordonsmyth, Question on your above answer: I have logTPM normalized data. Can I perform DE analysis using it on EdgeR, instead of in…
Comment: rtracklayer S.h by gibran • 0
Thanks, much appreciated. So I think this approach actually gets binaries and I'm not sure how to isolate the problem I was experiencing as…
Comment: DESeq2, Calculate the size factor by using median-of-ratio by KEREN • 0
Hi Michael, thank you for you reply. My concern here mainly focus on the high variances in samples of condition "mESC_mRNA_WT". I observed…
Comment: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by Rory Stark ★ 4.4k
I agree the documentation could be clearer -- it took me a while to understand what it said so I could address your issue!
Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by chrarnold • 0
Thanks a lot for your quick reply, it is very appreciated! Indeed, with your 2 suggested modifications, I can again reproduce the results f…
Votes
Answer: rtracklayer S.h
Answer: rtracklayer S.h
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
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