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Join the Technical Advisory Board
Bioconductor
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23 days ago • updated 16 days ago
Maria Doyle
▴ 20
1
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75
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Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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5 weeks ago
Maria Doyle
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updated 1 day ago by
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• 0 • written 7 months ago by
Maria Doyle
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8 months ago • updated 6 months ago
Peter Hickey
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2.2 years ago
Matthew Ritchie
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Matthew Ritchie
▴ 1000
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aedin
• 0 • written 2.3 years ago by
Matthew Ritchie
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2.6 years ago
shepherl
3.5k
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636
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DESeq2 multiple groups comparison issues, incorrect log2FC results in a small proportion of genes
deseq2
updated 2.6 years ago by
Michael Love
40k • written 2.6 years ago by
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• 0
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BridgeDbR devel package upgraded to BridgeDb 3
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2.6 years ago
egon.willighagen
▴ 10
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670
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2.6 years ago
kayla.interdonato
140
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729
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Project-wide Code of Conduct statement for Bioconductor
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2.6 years ago
Laurent Gatto
1.6k
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2.6 years ago
shepherl
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2.7 years ago
shepherl
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2.7 years ago
shepherl
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BioCAsia Virtual Meeting, 15-18 October 2020
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written 2.7 years ago by
Matthew Ritchie
▴ 1000
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1.1k
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News:
List of Deprecated Packages for Bioc3.12
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2.7 years ago
shepherl
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2.8 years ago
Johannes Rainer
★ 2.0k
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Ensembl 101 hase been released
Ensembl
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2.8 years ago
mchakiachvili
▴ 20
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2.9 years ago
Kasper Daniel Hansen
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3
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New Package Submission Workflow Updates!
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updated 22 months ago by
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• 0 • written 2.9 years ago by
shepherl
3.5k
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817
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2.9 years ago
shepherl
3.5k
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519
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3.0 years ago
shepherl
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492
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bioconductor
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3.0 years ago
shepherl
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500
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Long-term contribution award
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3.0 years ago
shepherl
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671
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written 3.0 years ago by
shepherl
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3.0 years ago
shepherl
3.5k
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0
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496
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News:
List of Deprecated Packages for Bioc3.12
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3.0 years ago
shepherl
3.5k
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0
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509
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New Package Bioconductor Award
bioconductor
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3.0 years ago
shepherl
3.5k
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0
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495
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3.0 years ago
shepherl
3.5k
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491
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3.0 years ago
shepherl
3.5k
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473
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3.0 years ago
kayla.interdonato
140
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430
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3.0 years ago
shepherl
3.5k
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620
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Bioconductor Technical Advisory Board Nominees, 2020
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written 3.0 years ago by
Martin Morgan
25k
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474
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Public Calendar of Events
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3.0 years ago
shepherl
3.5k
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696
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ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl
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ensembldb
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3.1 years ago
Johannes Rainer
★ 2.0k
1
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1
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621
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News:
Issues with annotation packages
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3.1 years ago
kayla.interdonato
140
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0
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530
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News:
Bioconductor 3.11 OrgDb and TxDb packages now available
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3.1 years ago
kayla.interdonato
140
1
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0
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470
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Ensembl 100 has been released
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3.1 years ago
Thomas Maurel
▴ 790
4
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519
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Bioconductor 3.11 is Released!
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bioconductor
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3.1 years ago
shepherl
3.5k
0
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0
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545
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News:
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bioconductor
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3.1 years ago
shepherl
3.5k
4
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3.5k
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News:
Nominations for Bioconductor Awards!
Bioc2020
Bioconductor
Awards
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News
3.1 years ago • updated 3.0 years ago
shepherl
3.5k
10
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0
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2.3k
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News:
Professor James Taylor
in memoriam
News
3.2 years ago
Martin Morgan
25k
0
votes
0
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537
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News:
Last Day to Submit New Packages for Bioconductor Release 3.11
deadline
new submission
bioconductor
release
News
3.2 years ago
shepherl
3.5k
2
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0
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549
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News:
Bioconductor Community Advisory Board Members
news
bioconductor oversight
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News
3.2 years ago
Matthew Ritchie
▴ 1000
1
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2
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2.1k
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News:
Bioc2020 - Call for BOF/HAK/FAQ Sections
conference
bioc2020
talks
deadline
News
3.2 years ago • updated 2.9 years ago
shepherl
3.5k
0
votes
3
replies
660
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 3.1 years ago by
kayla.interdonato
140 • written 3.2 years ago by
shepherl
3.5k
0
votes
0
replies
443
views
News:
Deadline for devel branch 3.11 to pass R CMD build and R CMD check
release
devel
bioconductor
News
3.2 years ago
shepherl
3.5k
0
votes
0
replies
423
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News:
Bioconductor Release 3.10 Code Freeze Deadline
release
deadline
bioconductor
News
3.2 years ago
shepherl
3.5k
0
votes
0
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422
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News:
Bioconductor 3.11 db0s are available
annotation
db0
news
release
News
3.2 years ago
kayla.interdonato
140
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Comment: Question on constructing design matrix and defining contrasts for analysis
by
mohammedtoufiq91
▴ 10
Sure, noted.
Comment: Question on constructing design matrix and defining contrasts for analysis
by
mohammedtoufiq91
▴ 10
@gordonsmyth Yes, I realized while re-running through the WGCNA workflow and forget to account for the paired experiment. For general gene …
Comment: Question on constructing design matrix and defining contrasts for analysis
by
Gordon Smyth
47k
PS. Just as aside, using `dput` to show a data.frame is unnecessary overkill. Just typing `targetsframe` at the prompt would do the job.
Comment: Question on constructing design matrix and defining contrasts for analysis
by
Gordon Smyth
47k
> Basically, I want to create a design matrix and binarize by 0 and 1 to be used in WGCNA analysis to compare module between/within groups …
Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl
by
ansleyharralson
• 0
Any estimate on when DelayedArray 0.26.3 will be released for macOS Binary (arm64)? Latest is still 0.26.02 best I can tell.
Votes
WGCNA coupled with differential expression analysis: question about baseline module detection
WGCNA with paired samples
Comment: Question on constructing design matrix and defining contrasts for analysis
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