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News: new package `ggtree` in devel branch
ggtree phylogenetic News
updated 6.6 years ago by ▴ 10 • written 6.7 years ago by ★ 1.2k
1
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0
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News: New Package Submission Process
submission News
5.3 years ago Dan Tenenbaum ★ 8.2k
5
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News: Bioconductor Package Archives
bioconductor archive news News
3.9 years ago Valerie Obenchain ★ 6.7k
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News: Nominations for Bioconductor Awards!
Bioc2020 Bioconductor Awards Recognition News
17 months ago • updated 15 months ago shepherl 2.8k
5
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News: Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication workflows benchmark teaching News
updated 5.5 years ago by ▴ 10 • written 5.5 years ago by 13k
13
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News: Updated Bioconductor Package Submission Policy
package submission News
5.7 years ago Martin Morgan 25k
6
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News: Bioconductor Git/GitHub Mirrors
git github git-svn bridge subversion News
updated 6.3 years ago by ★ 1.2k • written 6.3 years ago by ★ 8.2k
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News: Bioconductor 3.5 is released
bioconductor news release News
updated 4.4 years ago by 15k • written 4.4 years ago by ★ 6.7k
9
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News: Conference: BioC 2016: Where Software and Biology Connect, Stanford, 24-26 June
BioC2016 Conference News
updated 5.2 years ago by 2.8k • written 5.7 years ago by 25k
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3
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News: Updates to BiocStyle formatting
BiocStyle vignettes rmarkdown latex News
4.1 years ago Andrzej Oleś ▴ 750
5
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News: Invitation to submit articles to the Bioconductor gateway on F1000Research
publication News
3.5 years ago Sean Davis 21k
10
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News: Professor James Taylor
in memoriam News
17 months ago Martin Morgan 25k
20
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13
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News: markdown is coming to the support site
markdown News
4.2 years ago • updated 3.6 years ago Lucas Schiffer ▴ 220
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News: BioC 2017: Where Software and Biology Connect, 26 / 27 - 28 July, Boston, MA
conference bioc2017 News
4.5 years ago • updated 4.2 years ago Martin Morgan 25k
7
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5
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News: European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers conference workshop News
updated 5.9 years ago by 1.5k • written 6.0 years ago by ★ 1.1k
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News: Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub Gencode GFF3 FASTA News
6.1 years ago Sonali Arora ▴ 380
4
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News: Ensembl release 84 is out!
ensembl mart release84 biomart ensembl release News
updated 5.4 years ago by ▴ 20 • written 5.5 years ago by ▴ 790
9
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News: Experimental data package 'seqc'
seqc rsubread featurecounts subjunc ercc News
6.8 years ago Wei Shi ★ 3.3k
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News: F1000 research sponsored prize for contribution to Support forum
news News
5.8 years ago Mark Dunning ★ 1.1k
6
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News: Bioconductor git server is now LIVE!
git github svn git-svn bridge git mirror News
4.1 years ago nitesh.turaga 140
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News: Bioconductor git transition BETA phase starts now.
git svn infrastructure bioconductor News
4.2 years ago nitesh.turaga 140
1
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6
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1.6k
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how to create a NEWS file in R package
news package
updated 3.1 years ago by • 0 • written 3.2 years ago by • 0
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News: Ensembl release 81 is out!
human mouse GRCh38 biomart Ensembl News
updated 6.2 years ago by ▴ 380 • written 6.2 years ago by ▴ 790
1
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News: Bioc2020 - Call for BOF/HAK/FAQ Sections
conference bioc2020 talks deadline News
17 months ago • updated 14 months ago shepherl 2.8k
14
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News: Bioconductor packages now each have a DOI.
doi citation News
updated 4.0 years ago by 25k • written 4.1 years ago by 21k
9
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News: Ensembl release 80 is out!
biomart Ensembl zebrafish Rat 1000 genomes phase 3 News
updated 6.3 years ago by ▴ 380 • written 6.3 years ago by ▴ 790
6
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0
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News: BioC 2015 Annual Conference
BioC2015 News
6.4 years ago • updated 6.2 years ago Martin Morgan 25k
11
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0
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1.5k
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News: Bioconductor 3.0 is released!
news News
6.9 years ago Dan Tenenbaum ★ 8.2k
5
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News: edX online course introducing Bioconductor now up and running
annotation bioconductor News
updated 3.8 years ago by 25k • written 3.8 years ago by 6.5k
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News: BMC Source Code for Biology and Medicine: R/Bioconductor Workflows Section is calling for papers
workflows publish News
6.0 years ago Levi Waldron 1.1k
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News: European Bioconductor Developers' Meeting 12th-13th January 2015, Heidelberg
developers workshop conference meeting News
6.9 years ago Wolfgang Huber 13k
0
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News: Course announcement: CSAMA 2015 (13th ed.) Statistics and Computing in Genome Data Science
Course News
6.6 years ago Wolfgang Huber 13k
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News: Call for papers: CIBB 2015, Naples, September 10-12, 2015
conference bioinformatics News
6.6 years ago rancoita.paola • 0
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News: Announcing Docker containers for Bioconductor
docker News
6.7 years ago Dan Tenenbaum ★ 8.2k
6
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News: Bioconductor 3.4 is released
news announcement release News
4.9 years ago Hervé Pagès 15k
4
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2
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1.3k
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News: Announcing new test coverage shields
test coverage News
6.2 years ago Dan Tenenbaum ★ 8.2k
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News: Workshop Statistical Methods for Post Genomic Data in Munich, February 12-13, 2015
statistics workshop news News
7.0 years ago gagneur ▴ 10
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News: Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
workshop statistics single-cell News
5.1 years ago Wolfgang Huber 13k
1
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News: NGS data analysis training courses at EMBL-EBI
training News
6.7 years ago gr231 ▴ 10
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News: RNAseq data analysis courses: Torino (Italy) : Beginner course March 17-19 2015 & Advance Course April 14-16 2015
rnaseq mirna onechannelgui chimera News
6.7 years ago raffaele calogero ▴ 500
0
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News: system maintenance / downtime Wed March 11
news News
6.5 years ago Dan Tenenbaum ★ 8.2k
1
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News: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
bioconductor training course msstats proteomics News
3.7 years ago mnchoi67 ▴ 40
2
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1.2k
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News: Changes to matchGenes in bumphunter
annotation bumphunter News
updated 6.8 years ago by 34k • written 6.8 years ago by ▴ 60
0
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News: Workshop Statistical Learning of Biological Systems - Ascona, Switzerland, May 31 to June 5, 2015
Statistical Learning Workshop News
7.0 years ago • updated 6.6 years ago Wolfgang Huber 13k
4
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1
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1.2k
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News: Join the Bioconductor Community Advisory Board
bioconductoroversight community BiocVersion news
updated 6 months ago by • 0 • written 7 months ago by ▴ 1000
0
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1.2k
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News: Google hangout on Wed December 10th for new package authors
bioconductor News
updated 6.8 years ago by ▴ 380 • written 6.8 years ago by ★ 7.2k
7
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News: Bioconductor 3.7 is released
bioconductor release News
updated 3.4 years ago by • 0 • written 3.4 years ago by ★ 6.7k
10
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News: European Bioconductor meeting 2017, 4 / 5 - 6 December, Cambridge, UK
news conference eurobioc2017 News
4.1 years ago • updated 3.9 years ago Aaron Lun ★ 27k
8
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News: Bioconductor 3.2 is released!
news News
updated 5.9 years ago by ▴ 40 • written 5.9 years ago by ★ 8.2k
4
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News: Advanced Course: R programming and development 15-16. January 2015 (Thursday-Friday), EMBL Heidelberg
Course News
6.9 years ago Wolfgang Huber 13k
50 results • Page 1 of 1
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Comment: Recalculated abundance data output table with DEseq2 by Michael Love 34k
Yes, DESeq() then results(). When you print the table it will say MLE. No we don’t have a function to do that.
Comment: Recalculated abundance data output table with DEseq2 by michael.morash • 0
Thanks for getting back to me so quickly. The final comparison we are looking to report are the effects of filtering out low count genes us…
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Field -Ye • 0
Hi Professor Smyth, Thank you for pointing me to your previous publication. I went through the verbal part and found you did pursue the DG…
Comment: Macbook M1 install genefilter failed by Michael Love 34k
Try [n] to updating packages, and "no" to install from source.
Comment: Macbook M1 install genefilter failed by Alexandre • 0
Hi Michael, Sure > BiocManager::install("DESeq2") 'getOption("repos")' replaces Bioconductor standard repositories, see '?re…
Votes
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
Error in .rowNamesDF<-(x, value = value) :duplicate row.names are not allowed DESeq2
Comment: How to build a GRangesList where each GRanges element is a CDS coordinate of gen
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