4 months ago
Guandong Shang
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7 months ago
Guandong Shang
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updated 9 months ago by
jeroen.gilis
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written 9 months ago by
BioInfoBeginnerrr
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Comment: mas5calls function doesn't work; mirna40cdf problem
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Berna
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Thanks for all answers. I have tried, but still get an error message. Do you know how I can work around this?
> library(pd.mir…
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ATpoint
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I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
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ATpoint
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That having said, I recommend to inspect the MA-plots (`plotMA()`), at best the ones produced right from `res <- results(dds); plotMA(res)`…
Answer: Which genes are outliers in DESeq2?
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ATpoint
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You can take over some of the lines from `results()` to find them easily:
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suppressPackageStartupMessages(library(DESeq2))
set.s…
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