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OmicCircos
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612
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Question about OmicCircos
OmicCircos
6.0 years ago
ch8316f5eyu
• 0
0
votes
0
replies
909
views
Synteny plots with OmicCircos or Rcircos
omiccircos
rcircos
6.6 years ago
mictadlo
▴ 10
0
votes
0
replies
922
views
Omiccircos: how to draw a circos plot for non-model organisms
omiccircos
seganglepo
sim.circos
circos
6.7 years ago
Didi
▴ 10
2
votes
3
replies
3.4k
views
Making a circos plot to show expression for a gene set rather than whole genome
Gene set
gene set analysis
omiccircos
updated 6.7 years ago by
yifangt
▴ 20 • written 9.3 years ago by
Peter.Wood
• 0
0
votes
0
replies
1.2k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos
bug
hg19
hg18
data
7.0 years ago
matthew.bashton
• 0
0
votes
1
reply
1.5k
views
Circos Tile colors
OmicCircos
RCircos
updated 7.0 years ago by
bernatgel
▴ 150 • written 7.0 years ago by
Radek
▴ 90
0
votes
1
reply
2.3k
views
OmicCircos - Error in 1:scale.n : NA/NaN argument
OmicCircos
7.1 years ago
Stefan Langenberg
• 0
0
votes
0
replies
1.1k
views
OmicCircos Error in Colnames attribute mus be the same length as the vector
r
omiccircos
7.3 years ago
theobroma22
▴ 10
0
votes
0
replies
1.3k
views
OmicCircos barplot height and scale
omiccircos
7.3 years ago
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
0
replies
733
views
OmicCircos for non human genomes
omiccircos
rnaseq
plants
7.3 years ago
Didi
▴ 10
0
votes
0
replies
844
views
Zoom function in OmicCircos
OmicCircos
Zoom
7.3 years ago
abmora
• 0
0
votes
0
replies
761
views
How to plot a single segment using OmicCircos?
omiccircos
7.7 years ago
Shambho
• 0
1
vote
0
replies
764
views
the 23re and 24th segs cannot be plotted
OmicCircos
7.8 years ago
magcj89
▴ 10
3
votes
2
replies
2.6k
views
How to represent a relationship between physical map and linkage map of a sequenced data using OmicCircos or another similar
omiccircos
software R
bioconductor for genomic data science
linkage disequilibrium
updated 8.1 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 8.1 years ago by
pertille
• 0
0
votes
0
replies
1.3k
views
Can OmicCircos handle chicken ChIA-PET interactome?
OmicCircos
chicken
8.3 years ago
Gary
▴ 20
0
votes
0
replies
1.4k
views
Circos Styling plots is now easy with canceR package
canceR
visualization
omiccircos
9.0 years ago
kmezhoud
▴ 10
0
votes
0
replies
1.3k
views
News:
OmicCircos was updated
visualization
omiccircos
News
9.1 years ago
Hu, Ying NIH/NCI [E]
▴ 50
1
vote
3
replies
1.5k
views
OmicCircos mapping data file.
omiccircos
updated 9.1 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 9.5 years ago by
abdul rawoof
▴ 60
0
votes
1
reply
1.7k
views
extdata missing for non-human OmicCircos plots?
OmicCircos
updated 9.1 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 9.5 years ago by
micahgearhart
• 0
0
votes
2
replies
1.9k
views
How to specifiy colors for polygon links when using circos function of OmicCircos package
graph
omiccircos
updated 9.2 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 9.2 years ago by
wei.shen
• 0
0
votes
1
reply
1.3k
views
Larger values masking others for OmicCircos heatmap
differential gene expression
heatmap
Circos
omiccircos
9.3 years ago
Peter.Wood
• 0
21 results • Page
1 of 1
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Replies
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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