Showing : Omics • reset
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Job: Postdoc for computational biology on cancer omics data analysis at Liang lab of Wistar Institute, Philadelphia, US
omics cancerdata Pathways
3 months ago omicsresearch • 0
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Job: Postdoc at EMBL: spatial and single-cell computational biology for precision oncology, based in Heidelberg, Germany
omics Spatial postdoc
13 months ago Wolfgang Huber ★ 13k
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Job: Bioinformatics scientist (Full-time/Permanent) for the analysis of multiomics data in oncology
bioinformatics omics R oncology France
2.5 years ago vincent.piras • 0
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Job: Job: Moderna Statistical genomics co-op 2022, single-cell applications in immunology, masters or PhDs
co-op immunology single-cell omics
2.6 years ago joyce.hsiao1 • 0
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Job: Senior Bioinformatician at AstraZeneca - Biology/Chemistry Interface and Proteomics Research (Cambridge, UK)
Omics AstraZeneca DrugDiscovery Bioinformatics
2.6 years ago Sergio Martinez Cuesta • 0
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"Integrative transcriptomics" reveal or reveals?
english language omics orthography
updated 4.8 years ago by 50k • written 4.8 years ago by ▴ 50
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Job: Post-Doc Biostatistics/Bioinformatics for high-dimensional transcriptomic data
bioinformatician/biostatistician position statistical inference high dimensionnal omics R Job
6.9 years ago julie.chevalier • 0
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News: Pathview Web server published in NAR
pathway analysis visualization data integration omics pathview News
7.0 years ago • updated 6.9 years ago Luo Weijun ★ 1.6k
8 results • Page 1 of 1
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Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions by JKim • 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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Scholar to James W. MacDonald 65k
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Popular Question to Gordon Smyth 50k
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