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OrgDB
•
reset
0
votes
0
replies
1.1k
views
Error: package or namespace load failed for 'AnnotationDbi' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
OrgDb
9 months ago
hswdl
• 0
1
vote
7
replies
969
views
Adding geneID to list of gene locus IDs
cluster
OrgDb
clusterProfiler
written 10 months ago by
Chruut
• 0
0
votes
4
replies
746
views
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
OrgDb
9 months ago
hendrikwenneker
• 0
1
vote
9
replies
955
views
Why is OrgDb linked to specific biocversion? / How to analyze old datasets?
BiocVersion
OrgDb
clusterProfiler
11 months ago
MK
• 0
0
votes
1
reply
450
views
Share Annotation Packages
OrgDb
AnnotationDbi
updated 11 months ago by
shepherl
3.5k • written 11 months ago by
Imad
• 0
0
votes
1
reply
857
views
Exporting org.*.*.db Gene Ontology annotations to excel sheet or txt
OrgDb
RNASeq
updated 20 months ago by
James W. MacDonald
63k • written 20 months ago by
Jonas
• 0
0
votes
7
replies
3.2k
views
how to create an OrgDb package?
orgDb
annotationForge
updated 17 months ago by
pengxinyang12
• 0 • written 23 months ago by
Haibo Liu
• 0
1
vote
2
replies
1.1k
views
Translating Solanum lycopersum gene IDs to ENTREZIDs for GO enrichment analysis using clusterProfiler
OrgDb
Bioconductor
AnnotationHub
clusterProfiler
updated 2.4 years ago by
Guido Hooiveld
★ 3.7k • written 2.4 years ago by
ju.ry
• 0
0
votes
0
replies
632
views
Adding to Pseudomonas aeruginosa PAO1 to OrgDb
OrgDb
2.5 years ago
Thomas.H.Hampton
• 0
2
votes
3
replies
1.3k
views
Gene Ontology Analysis of DE Genes
clusterProfiler
AnnotationDbi
OrgDb
goseq
updated 2.7 years ago by
James W. MacDonald
63k • written 2.7 years ago by
vanbelj
▴ 20
0
votes
2
replies
964
views
Can't select GO from AnnotationHub orgDB packages
GO.db
AnnotationHub
OrgDB
updated 3.2 years ago by
James W. MacDonald
63k • written 3.2 years ago by
Jenny Drnevich
★ 2.0k
3
votes
6
replies
1.7k
views
How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub
OrgDb
snapshotDate
updated 14 months ago by
shepherl
3.5k • written 3.4 years ago by
Jenny Drnevich
★ 2.0k
0
votes
34
replies
7.1k
views
Error: installation of package org.Mm.eg.db had non-zero exit status
OrgDb
updated 3.5 years ago by
Michaël Degaud
• 0 • written 4.0 years ago by
zhangdengwei
• 0
7
votes
44
replies
4.0k
views
OrgDB download failed via AnnotationHub
annotationhub
orgdb
updated 4.2 years ago by
shepherl
3.5k • written 4.3 years ago by
chirag.parsania
• 0
3
votes
6
replies
1.5k
views
How to create a customized OrgDb in order to perform kegga analysis?
limma
kegga
orgdb
updated 5.6 years ago by
Gordon Smyth
48k • written 5.6 years ago by
baus87
• 0
0
votes
1
reply
1.2k
views
News:
OrgDbs in AnnotationHub
annotationhub
orgdb
News
5.9 years ago
shepherl
3.5k
0
votes
0
replies
1.1k
views
News:
OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6
orgdb
txdb
bioconductor
annotation
annotationhub
News
5.9 years ago
shepherl
3.5k
0
votes
6
replies
1.4k
views
Why are important organisms missing from AnnotationHub. Example query(hub, "Zea")
orgdb
annotationhub
6.2 years ago
slbai01
• 0
0
votes
2
replies
1.7k
views
add annotation features to BSgenome or txdb package
bsgenome
txdb
annotation
orgdb
6.2 years ago
Didi
▴ 10
1
vote
0
replies
1.0k
views
News:
complete set of OrgDb packages have been added to AnnotationHub
bioconductor
annotationhub
orgdb
News
6.3 years ago
shepherl
3.5k
0
votes
4
replies
1.2k
views
Annotation Hub object no longer present
Orgdb
6.8 years ago
anamabrantesc
• 0
2
votes
12
replies
2.0k
views
ann_objs$MAPCOUNTS <- AnnotationDbi:::createMAPCOUNTS(dbconn, prefix) does not work well
annotation
orgdb
7.6 years ago
knishida
▴ 20
3
votes
13
replies
2.2k
views
Org.db: why a supposed unique key (ID) has multiple entries?
annotationhub
organismdb
orgdb
unsupported organisms
updated 7.7 years ago by
Valerie Obenchain
★ 6.8k • written 7.7 years ago by
Guido Hooiveld
★ 3.7k
0
votes
5
replies
1.5k
views
Why are important organisms missing from AnnotationHub() $rdataclass == "OrgDb"?
annotationhub
orgdb
updated 7.9 years ago by
Valerie Obenchain
★ 6.8k • written 7.9 years ago by
efoss
▴ 10
0
votes
0
replies
1.1k
views
Error in makeOrgPackageFromNCBI
GO
OrgDb
annotate
GOstats
GO
OrgDb
annotate
GOstats
10.3 years ago
Chris Whelan
▴ 60
0
votes
6
replies
1.3k
views
Creating an OrganismDbi package with a few transcript annotations
OrgDb
OrganismDbi
OrgDb
OrganismDbi
updated 10.4 years ago by
Martin Morgan
25k • written 10.4 years ago by
Michael Lawrence
11k
0
votes
1
reply
1.5k
views
problem creating own org.Ss.eg.db
Annotation
GO
Organism
OrgDb
Annotation
GO
Organism
OrgDb
updated 11.6 years ago by
Guido Hooiveld
★ 3.7k • written 11.6 years ago by
Marc Carlson
★ 7.2k
27 results • Page
1 of 1
Recent ...
Replies
Comment: Exporting DESeq2 filtered results
by
James W. MacDonald
63k
I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…
Comment: Speeding up of DelayedArray::write_block()
by
Hervé Pagès
16k
> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…
Comment: Speeding up of DelayedArray::write_block()
by
Hervé Pagès
16k
Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…
Comment: Biostrings error at retrieving protein sequences
by
Hervé Pagès
16k
Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…
Comment: Exporting DESeq2 filtered results
by
camillab.
▴ 10
thanks! I didn't`t notice that. I will cancel it now!
Votes
Batch Effect in DESeq2, how to control, how to remove it, how to address biological question
A: BiomaRt Arabidopsis genome unavailable
Answer: enrichKEGG
A: Effect of lfcThreshold on p-value in DESeq2
Comment: Mixed up sample info with plotPCA
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Yahan
• 0
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to
Gordon Smyth
48k
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to
Guido Hooiveld
★ 3.7k
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to
camillab.
▴ 10
Popular Question
to
James W. MacDonald
63k
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