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OrgDb
•
reset
2
votes
4
replies
510
views
Need help generating BSgenome and orgdb
OrgDb
BSgenome
6 months ago • updated 11 weeks ago
mat149
▴ 70
1
vote
3
replies
444
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo
OrgDb
convert
Organismname
RStudio
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
j_denton
• 0
0
votes
3
replies
119
views
Error for AnnotationForge makeOrgPackageFromNCBI function
OrgDb
AnnotationForge
updated 51 minutes ago by
James W. MacDonald
65k • written 1 day ago by
Gayatri
• 0
2
votes
2
replies
126
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 4 days ago by
James W. MacDonald
65k • written 4 days ago by
sansan
• 0
2
votes
1
reply
184
views
Only positive enrichment score in GSEA
clusterProfiler
annotation
gseGO
gsea
OrgDb
updated 29 days ago by
Guido Hooiveld
★ 3.9k • written 4 weeks ago by
enee
▴ 10
5 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 - dispersion estimation when there is none
by
Michael Love
41k
The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper. > Some caution is warr…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…
Comment: Methylation Analysis experiment design using Limma
by
hortense96
• 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
Comment: Limma design with continuous and categorical covariates
by
hortense96
• 0
Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …
Answer: minfi::read.metharray.exp
by
Basti
▴ 770
Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…
Votes
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
Comment: Cannabis and KEGGgraph
Answer: Cannabis and KEGGgraph
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Michael Love
41k
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shepherl
3.8k
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to
Gordon Smyth
50k
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taur.vil
• 0
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Yuan Tian
▴ 280
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