Bioconductor Outlier

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434

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Outlier

updated 13 months ago by ATpoint ★ 4.0k • written 13 months ago by sanchita.bhattacharya • 0

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1.1k

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DESeq2 RNAseq outlier

updated 14 months ago by ATpoint ★ 4.0k • written 14 months ago by James • 0

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1.9k

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RNAseq DESeq2 outlier counts DE analysis

updated 3.9 years ago by Kevin Blighe ★ 3.9k • written 3.9 years ago by DcL-A • 0

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725

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deseq2 outlier normalization removal

updated 4.1 years ago by Michael Love 41k • written 4.1 years ago by knholm • 0

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6.5k

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deseq2 rnaseq PCA hierarchical clustering outlier

7.4 years ago wd ▴ 30

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1.5k

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rnaseq outlier statistics batch effect

updated 7.9 years ago by Gordon Smyth 50k • written 7.9 years ago by grastalt27 • 0

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1.3k

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arrayQualityMetrics Microarray Outlier

updated 8.4 years ago by Wolfgang Huber ★ 13k • written 8.4 years ago by horcsct ▴ 10

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4.5k

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DESeq2 outlier RNASeq

updated 9.4 years ago by Michael Love 41k • written 9.4 years ago by kenneth.daily • 0

8 results • Page 1 of 1

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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Dear Michael, I tried all three ways (the orIginal, increasing the number of required samples,and subsetting (the countdata and metadata be…

Comment: DESeq2 - dispersion estimation when there is none by Michael Love 41k

The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper. > Some caution is warr…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…

Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

Comment: Limma design with continuous and categorical covariates by hortense96 • 0

Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …

Votes

Comment: DESeq2 - dispersion estimation when there is none

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa

Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Awards • All

Scholar to Michael Love 41k