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Outlier
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4
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5
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6.4k
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outlier detection of RNAseq samples
deseq2
rnaseq
PCA
hierarchical clustering
outlier
7.3 years ago
wd
▴ 30
2
votes
3
replies
1.5k
views
RNAseq outlier is a critical sample
rnaseq
outlier
statistics
batch effect
updated 7.8 years ago by
Gordon Smyth
50k • written 7.8 years ago by
grastalt27
• 0
1
vote
3
replies
705
views
DE analysis outlier removal
deseq2
outlier
normalization
removal
updated 4.0 years ago by
Michael Love
41k • written 4.0 years ago by
knholm
• 0
1
vote
8
replies
1.8k
views
[Outlier Gene removal] - One sample with outlier counts for some genes
RNAseq
DESeq2
outlier
counts
DE analysis
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
DcL-A
• 0
1
vote
7
replies
4.5k
views
DESeq2 outlier detection not filtering
DESeq2
outlier
RNASeq
updated 9.3 years ago by
Michael Love
41k • written 9.3 years ago by
kenneth.daily
• 0
1
vote
1
reply
1.3k
views
arrayQualityMetrics for outlier detection
arrayQualityMetrics
Microarray
Outlier
updated 8.3 years ago by
Wolfgang Huber
★ 13k • written 8.4 years ago by
horcsct
▴ 10
0
votes
2
replies
1.1k
views
Which genes are outliers in DESeq2?
DESeq2
RNAseq
outlier
updated 13 months ago by
ATpoint
★ 4.0k • written 13 months ago by
James
• 0
0
votes
1
reply
418
views
Outlier removal outcome
Outlier
updated 12 months ago by
ATpoint
★ 4.0k • written 12 months ago by
sanchita.bhattacharya
• 0
8 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Answer: Merging featureCounts output for different species
by
Michael Love
41k
Bioconductor support site is for posting questions about software. Try biostars.
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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