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9
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msa alignement: sorted sequences by sequence name
msa
alignement
output
sorted
7.2 years ago
Olorin
▴ 50
2
votes
8
replies
4.1k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights
output
updated 6.3 years ago by
Gordon Smyth
50k • written 6.3 years ago by
harelarik
▴ 60
0
votes
3
replies
1.2k
views
MEDIPS - Annotation output explanation
MEDIPS
Output
5.9 years ago
vjain
• 0
3
votes
6
replies
1.3k
views
Interpreting the output of score test using GENESIS
genesis
output
score
updated 4.5 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.5 years ago by
lassana.a.samarakoon
▴ 10
0
votes
3
replies
1.6k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 3.5 years ago by
UBodenhofer
▴ 290 • written 3.6 years ago by
matamunee
• 0
0
votes
5
replies
6.2k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 8.4 years ago by
Michael Love
41k • written 8.4 years ago by
amyfm
▴ 10
0
votes
2
replies
680
views
Number of rows in DESeq2 output (.csv) is not the same as number of rows in the results(dds) dataframe
output
difference
21 months ago
Jamie
• 0
2
votes
2
replies
1.3k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 7.4 years ago by
chen_hao
▴ 30 • written 7.4 years ago by
cjackson13
• 0
1
vote
1
reply
1.6k
views
limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma
voom
edgeR
toptable
output
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
heikki.sarin
▴ 10
9 results • Page
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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