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9
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msa alignement: sorted sequences by sequence name
msa
alignement
output
sorted
7.2 years ago
Olorin
▴ 50
2
votes
8
replies
4.1k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights
output
updated 6.3 years ago by
Gordon Smyth
50k • written 6.3 years ago by
harelarik
▴ 60
3
votes
6
replies
1.3k
views
Interpreting the output of score test using GENESIS
genesis
output
score
updated 4.5 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.5 years ago by
lassana.a.samarakoon
▴ 10
0
votes
5
replies
6.2k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 8.4 years ago by
Michael Love
41k • written 8.4 years ago by
amyfm
▴ 10
0
votes
3
replies
1.2k
views
MEDIPS - Annotation output explanation
MEDIPS
Output
5.9 years ago
vjain
• 0
0
votes
3
replies
1.6k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 3.5 years ago by
UBodenhofer
▴ 290 • written 3.5 years ago by
matamunee
• 0
2
votes
2
replies
1.3k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 7.4 years ago by
chen_hao
▴ 30 • written 7.4 years ago by
cjackson13
• 0
0
votes
2
replies
678
views
Number of rows in DESeq2 output (.csv) is not the same as number of rows in the results(dds) dataframe
output
difference
21 months ago
Jamie
• 0
1
vote
1
reply
1.6k
views
limma: The topTable function implementation when outputin the differential expression results from RNA-seq dataset?
limma
voom
edgeR
toptable
output
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
heikki.sarin
▴ 10
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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