Bioconductor P-Value

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10k

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FDR p-value DESeq RNA-Seq

updated 6.4 years ago by Wade Davis ▴ 60 • written 6.9 years ago by yjiangnan ▴ 10

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4.2k

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p-value detection

updated 8.2 years ago by Gordon Smyth 50k • written 8.2 years ago by Eleni Christodoulou ▴ 150

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13k

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deseq differential gene expression statistics p-value

updated 3.1 years ago by Kai_Qi ▴ 20 • written 8.2 years ago by Giard ▴ 30

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1.6k

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deseq2 p-value continuous deseq

5.2 years ago ariel ▴ 20

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1.4k

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deseq2 normalization p-value metaseq

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by ed_isfahani • 0

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1.3k

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statistical significance p-value q-value FDR qvalue

4.3 years ago manozawa ▴ 10

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3.1k

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limma microarray fdr p-value results

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by bhgyu ▴ 30

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898

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ihw p-value multiple hypothesis

updated 4.9 years ago by Wolfgang Huber ★ 13k • written 4.9 years ago by xiaotong.yao23 ▴ 10

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2.2k

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p-value medips MACS

updated 8.9 years ago by Lukas Chavez ▴ 570 • written 8.9 years ago by tptacek3050 • 0

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1.9k

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p-value FDR DEP

updated 2.8 years ago by António Miguel de Jesus Domingues ▴ 490 • written 3.4 years ago by Alexei Leliavski ▴ 60

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2.0k

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DESeq2 nbinomWaldTest one-sided p-value

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by t.kuilman ▴ 170

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2.3k

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rankprod p-value

updated 8.8 years ago by James W. MacDonald 65k • written 8.8 years ago by brilladine • 0

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4.0k

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gwas genesis p-value q-q-plot

updated 3.2 years ago by Anna • 0 • written 4.4 years ago by solanum • 0

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945

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one-sided nbinomWaldTest p-value meta-analysis DESeq2

updated 2.6 years ago by Michael Love 41k • written 2.6 years ago by nash12 • 0

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2.0k

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diffbind p-value differential binding analysis fold enrichment values using diffbind

updated 7.9 years ago by Rory Stark ★ 5.1k • written 7.9 years ago by alisonhanh.nguyen • 0

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1.1k

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edgeR FDR p-value Benjamini-Hochberg Differential Analysis

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by ilovesuperheroes1993 • 0

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1.0k

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weighted correlation network analysis WGCNA P-Value

5.7 years ago modarzi ▴ 10

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536

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outputresult DEqMS sca.adj.pval error p-value

18 months ago Bastian • 0

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969

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Gostats p-value

6.8 years ago salamandra ▴ 20

19 results • Page 1 of 1

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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