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PAPi
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Issues uploading database for metabolomic data analysis with Pathway Activity Profiling - PAPi
papi
metabolomics
pathway analysis
updated 7.1 years ago by
k_hulce
▴ 10 • written 8.0 years ago by
hp71727
▴ 10
1
vote
3
replies
1.4k
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Metabolomic data analysis with papi / papiHtest() does not work as expected
Pathways
PAPi
Pathways
PAPi
updated 10.4 years ago by
Aggio, Raphael
▴ 20 • written 10.4 years ago by
Guest User
★ 13k
0
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0
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PAPi help
PAPi
7.2 years ago
k_hulce
▴ 10
0
votes
0
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1.0k
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'names' attribute must be the same length as the vector - PAPi problems
PAPi
metabolomics
pathway analysis
raphael
5.8 years ago
maryke.wijma
• 0
4 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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