Bioconductor PCAtools

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DESeq2 PCAtools

updated 2 hours ago by JKim • 0 • written 12 hours ago by Aaliya • 0

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DESeq2 RSTUDIO PCAtools

updated 10 hours ago by swbarnes2 ★ 1.3k • written 2 days ago by Aaliya • 0

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Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Comment: PCA plot suggestions by JKim • 0

cross post: https://www.biostars.org/p/9593486/

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C: null model and DEXSeqDataSet object in DEXSEQ

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Scholar to James W. MacDonald 65k

Supporter to JKim • 0