Bioconductor PCAtools

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DESeq2 PCAtools

3 hours ago Aaliya • 0

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DESeq2 RSTUDIO PCAtools

updated 1 hour ago by swbarnes2 ★ 1.3k • written 1 day ago by Aaliya • 0

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edgeR PCAtools

updated 25 days ago by Gordon Smyth 50k • written 27 days ago by Fabian • 0

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Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0

Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

This comment helps.

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Answer: Interpret plot from DiffBind

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Supporter to JKim • 0