Bioconductor PCAtools

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DESeq2 PCAtools

10 hours ago Aaliya • 0

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217

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DESeq2 RSTUDIO PCAtools

updated 8 hours ago by swbarnes2 ★ 1.3k • written 1 day ago by Aaliya • 0

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338

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edgeR PCAtools

updated 25 days ago by Gordon Smyth 50k • written 27 days ago by Fabian • 0

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1.1k

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Biplot FactoMineR proteomics PCAtools ellipse

updated 15 months ago by Kevin Blighe ★ 3.9k • written 15 months ago by M Tuhin • 0

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936

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illumina PCAtools PCA

updated 17 months ago by Kevin Blighe ★ 3.9k • written 17 months ago by ilaria.debenedictis • 0

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846

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PCAtools bioconductor

updated 21 months ago by James W. MacDonald 65k • written 21 months ago by pterry • 0

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1.1k

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PCAtools pcaExplorer pcaMethods

updated 22 months ago by Federico Marini ▴ 150 • written 22 months ago by m610110001 • 0

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2.4k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.0 years ago Alan • 0

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3.5k

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ellipse RNAseq PCAtools

updated 12 months ago by CP • 0 • written 2.9 years ago by elizabethe819 • 0

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825

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PCAtools

3.1 years ago luca.s ▴ 50

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2.6k

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PCAtools

updated 3.2 years ago by Kevin Blighe ★ 3.9k • written 3.2 years ago by Terra • 0

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3.2k

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biplot PCA RNASeq PCAtools

updated 3.4 years ago by Kevin Blighe ★ 3.9k • written 3.4 years ago by mschmidt ▴ 10

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1.7k

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PCAtools biplot DESeq2 RNASeq PCA

updated 3.4 years ago by Kevin Blighe ★ 3.9k • written 3.4 years ago by ecg1g15 ▴ 20

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PCATools

updated 3.5 years ago by Kevin Blighe ★ 3.9k • written 3.5 years ago by oakhamwolf • 0

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1.5k

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EDA pcaExplorer PCAtools PCA

updated 2.4 years ago by Miguel ▴ 10 • written 3.7 years ago by k.vitting.seerup ▴ 120

15 results • Page 1 of 1

Recent ...

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Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k

You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Votes

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0