Bioconductor PCa

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PCA DESeq2

8 months ago • updated 7 months ago IUH • 0

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PCA

written 6.5 years ago by tanyabioinfo ▴ 20

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pcaMethods pca

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by yousavdj • 0

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DiffBind PCA

24 days ago feather-W • 0

4 results • Page 1 of 1

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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by Tim Peters ▴ 170

Hi Jose and Russ, Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …

Comment: Trying to use enrichGO by fernanda.backsouza • 0

Sure, I changed it but still NULL G0 <- enrichGO( gene = ortologos_filtrados$Gene.ID, OrgDb = org.Cs.eg.db, keyType = "ENTREZID",…

Answer: limma-voom: Calculate the log-fold change in gene expression within a sample by Gordon Smyth 50k

No, you cannot use residuals to compute logFCs. From the information you give, I guess that you need to add individual-specific condition …

Comment: Error EPICv2 ChAMP by James W. MacDonald 65k

You don't need to do either of the above suggestions. ``` library(BiocManager) install("YuanTian1991/ChAMPdata") ``` will install without…

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Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

Answer: Differentially expressed genes in monocle pseudotime

Answer: DESeq2 - dispersion estimation when there is none

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Scholar to Gordon Smyth 50k