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TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 16 months ago by • 0 • written 17 months ago by ▴ 90
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Job: Bioconductor Core developers group opening
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19 months ago Vincent J. Carey, Jr. 6.7k
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Change the interval of bed file
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updated 2.2 years ago by 65k • written 2.2 years ago by • 0
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python and R
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
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Load data with rhdf5
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
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updated 4.7 years ago by ▴ 30 • written 4.7 years ago by ▴ 10
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4.7 years ago Fred Hutch (Recruiting) ▴ 40
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5.7 years ago l.brown ▴ 10
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6.1 years ago EMBL Recruitment • 0
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8.2 years ago Doe, Aimee ▴ 40
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8.5 years ago Fiona ▴ 70
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23 results • Page 1 of 1
Recent ...
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Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
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Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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