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5
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23
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6.2k
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Convertion of indexed bam file to tsv file format
python samtools
updated 8.5 years ago by 16k • written 8.5 years ago by • 0
0
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0
replies
1.9k
views
Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
8.2 years ago Doe, Aimee ▴ 40
0
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0
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1.8k
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
8.0 years ago • updated 7.7 years ago clif.duhn • 0
3
votes
4
replies
1.6k
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seq2pathway error on Mac OS X
seq2pathway error python mac os x
8.6 years ago termanini ▴ 10
0
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0
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1.6k
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Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
8.8 years ago careers • 0
1
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2
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1.5k
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
4.0 years ago Raito92 ▴ 60
0
votes
0
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1.5k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq splicing python SAM
8.5 years ago Fiona ▴ 70
5
votes
0
replies
1.4k
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Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R python deep learning machine learning cancer genomics Job
7.1 years ago Shamith.Samarajiwa ▴ 180
0
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0
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1.4k
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Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
7.7 years ago clif.duhn • 0
1
vote
2
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1.3k
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Load data with rhdf5
rhdf5 python
updated 14 months ago by • 0 • written 4.0 years ago by • 0
2
votes
0
replies
1.2k
views
Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
6.2 years ago ematsen ▴ 20
0
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0
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1.2k
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Job: Bioinformatics Engineer / Data Analyst
python bio ngs linux Job
6.1 years ago EMBL Recruitment • 0
2
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4
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1.1k
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 4.7 years ago by ▴ 30 • written 4.7 years ago by ▴ 10
0
votes
0
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1.0k
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job rna-seq chipseq gsea python Job
5.7 years ago l.brown ▴ 10
0
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0
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1.0k
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Job: Bioinformatics Scientist II
bioinformatics scientist python computational Job
5.2 years ago careers • 0
0
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0
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939
views
Job: Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
GENOMICS BIOINFORMATICS SEATTLE R PYTHON Job
4.7 years ago Fred Hutch (Recruiting) ▴ 40
0
votes
1
reply
889
views
Change the interval of bed file
mappability bed python
updated 2.3 years ago by 65k • written 2.3 years ago by • 0
0
votes
0
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842
views
Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.1 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
828
views
Job: Senior Data Engineer | Poland | remote
AWS BigData Engineer python
3.0 years ago Ewa • 0
0
votes
1
reply
805
views
python and R
snpeff python tophat r RNAseq123
updated 2.7 years ago by ★ 3.9k • written 2.7 years ago by • 0
1
vote
0
replies
792
views
Job: Bioconductor Core developers group opening
R cloud github python git
20 months ago Vincent J. Carey, Jr. 6.7k
1
vote
1
reply
777
views
Python functionality feature request
python bioconductor
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
0
votes
2
replies
710
views
TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 16 months ago by • 0 • written 17 months ago by ▴ 90
23 results • Page 1 of 1
Recent ...
Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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