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TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 16 months ago by • 0 • written 17 months ago by ▴ 90
1
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787
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Job: Bioconductor Core developers group opening
R cloud github python git
19 months ago Vincent J. Carey, Jr. 6.7k
0
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1
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887
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Change the interval of bed file
mappability bed python
updated 2.2 years ago by 65k • written 2.3 years ago by • 0
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803
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python and R
snpeff python tophat r RNAseq123
updated 2.7 years ago by ★ 3.9k • written 2.7 years ago by • 0
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Job: Senior Data Engineer | Poland | remote
AWS BigData Engineer python
3.0 years ago Ewa • 0
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
4.0 years ago • updated 3.9 years ago Raito92 ▴ 60
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2
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Load data with rhdf5
rhdf5 python
updated 14 months ago by • 0 • written 4.0 years ago by • 0
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4
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1.1k
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 4.7 years ago by ▴ 30 • written 4.7 years ago by ▴ 10
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934
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Job: Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
GENOMICS BIOINFORMATICS SEATTLE R PYTHON Job
4.7 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.0 years ago Shamith.Samarajiwa ▴ 180
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Job: Bioinformatics Scientist II
bioinformatics scientist python computational Job
5.2 years ago careers • 0
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1.0k
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job rna-seq chipseq gsea python Job
5.7 years ago l.brown ▴ 10
1
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775
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Python functionality feature request
python bioconductor
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
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1.2k
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Job: Bioinformatics Engineer / Data Analyst
python bio ngs linux Job
6.1 years ago EMBL Recruitment • 0
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Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
6.2 years ago ematsen ▴ 20
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Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R python deep learning machine learning cancer genomics Job
7.0 years ago Shamith.Samarajiwa ▴ 180
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1.4k
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Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
7.7 years ago clif.duhn • 0
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1.8k
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
8.0 years ago • updated 7.7 years ago clif.duhn • 0
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Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
8.2 years ago Doe, Aimee ▴ 40
5
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23
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6.2k
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Convertion of indexed bam file to tsv file format
python samtools
updated 8.5 years ago by 16k • written 8.5 years ago by • 0
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0
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1.5k
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DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq splicing python SAM
8.5 years ago Fiona ▴ 70
3
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4
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1.6k
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seq2pathway error on Mac OS X
seq2pathway error python mac os x
8.6 years ago termanini ▴ 10
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1.6k
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Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
8.8 years ago careers • 0
23 results • Page 1 of 1
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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