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5
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23
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6.2k
views
Convertion of indexed bam file to tsv file format
python samtools
updated 8.5 years ago by 16k • written 8.5 years ago by • 0
0
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0
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1.9k
views
Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
8.2 years ago Doe, Aimee ▴ 40
0
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0
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1.8k
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
8.0 years ago • updated 7.7 years ago clif.duhn • 0
3
votes
4
replies
1.6k
views
seq2pathway error on Mac OS X
seq2pathway error python mac os x
8.6 years ago termanini ▴ 10
0
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0
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1.6k
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Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
8.8 years ago careers • 0
0
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0
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1.5k
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DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq splicing python SAM
8.5 years ago Fiona ▴ 70
1
vote
2
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1.5k
views
DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
4.0 years ago • updated 3.9 years ago Raito92 ▴ 60
5
votes
0
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1.4k
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Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R python deep learning machine learning cancer genomics Job
7.0 years ago Shamith.Samarajiwa ▴ 180
0
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0
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1.4k
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Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
7.7 years ago clif.duhn • 0
1
vote
2
replies
1.3k
views
Load data with rhdf5
rhdf5 python
updated 14 months ago by • 0 • written 4.0 years ago by • 0
2
votes
0
replies
1.2k
views
Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
6.2 years ago ematsen ▴ 20
0
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0
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1.2k
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Job: Bioinformatics Engineer / Data Analyst
python bio ngs linux Job
6.1 years ago EMBL Recruitment • 0
2
votes
4
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1.1k
views
Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 4.7 years ago by ▴ 30 • written 4.7 years ago by ▴ 10
0
votes
0
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1.0k
views
Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job rna-seq chipseq gsea python Job
5.7 years ago l.brown ▴ 10
0
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0
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1.0k
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Job: Bioinformatics Scientist II
bioinformatics scientist python computational Job
5.2 years ago careers • 0
0
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0
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931
views
Job: Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
GENOMICS BIOINFORMATICS SEATTLE R PYTHON Job
4.7 years ago Fred Hutch (Recruiting) ▴ 40
0
votes
1
reply
886
views
Change the interval of bed file
mappability bed python
updated 2.2 years ago by 65k • written 2.2 years ago by • 0
0
votes
0
replies
839
views
Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.0 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
820
views
Job: Senior Data Engineer | Poland | remote
AWS BigData Engineer python
3.0 years ago Ewa • 0
0
votes
1
reply
802
views
python and R
snpeff python tophat r RNAseq123
updated 2.7 years ago by ★ 3.9k • written 2.7 years ago by • 0
1
vote
0
replies
786
views
Job: Bioconductor Core developers group opening
R cloud github python git
19 months ago Vincent J. Carey, Jr. 6.7k
1
vote
1
reply
775
views
Python functionality feature request
python bioconductor
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
0
votes
2
replies
703
views
TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 16 months ago by • 0 • written 17 months ago by ▴ 90
23 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
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Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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