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4
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7
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package ‘edgeR’ is not available (for R version 3.1.2)
edgeR
packages
9.1 years ago
Patrick Schorderet
▴ 20
1
vote
11
replies
2.0k
views
Bioconductor Software Packages raw (not html) detail view?
packages
details
9.1 years ago • updated 8.7 years ago
smoretti
▴ 10
0
votes
4
replies
1.5k
views
Newbee question: how to output/write data (measureents) to a text file?
packages
8.2 years ago
Reinert Korsnes
• 0
0
votes
2
replies
1.9k
views
Issues installing packages miniconda environment
bioclite
deseq2
miniconda
packages
6.1 years ago
cpat
• 0
3
votes
3
replies
1.2k
views
Incomplete Install of Bioconductor Packages
Installation
Packages
Missing
updated 3.7 years ago by
Laurent Gatto
1.6k • written 3.9 years ago by
sreedta8
▴ 10
0
votes
2
replies
1.2k
views
News:
Single Package Builder / New Package Submission
new submission
build report
packages
News
6.4 years ago
shepherl
3.8k
0
votes
1
reply
630
views
Notification for package release?
packages
updated 2.8 years ago by
Lluís Revilla Sancho
▴ 730 • written 2.8 years ago by
curiousmind007
▴ 10
2
votes
7
replies
1.2k
views
Is there a way to find corresponding svn revision for the current /devel/src/contrib/PACKAGES and /release?
svn
PACKAGES
updated 9.0 years ago by
Dan Tenenbaum
★ 8.2k • written 9.0 years ago by
levk
• 0
2
votes
4
replies
2.3k
views
Package RnBeads not available for R 3.1.2?
RnBeads
packages
R 3.1.2
8.7 years ago
bmreilly
• 0
2
votes
1
reply
2.7k
views
Installation of bioConductor packages
installation
packages
bioconductor
all
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
av
• 0
3
votes
6
replies
2.2k
views
List of package names with versions
packages
updated 8.1 years ago by
Sushant Pawar
• 0 • written 8.1 years ago by
nathan.watsonhaigh
• 0
3
votes
3
replies
1.5k
views
Question regarding best bioconductor package for RNA-seq
rna-seq
packages
updated 7.1 years ago by
b.nota
▴ 360 • written 7.1 years ago by
Maximilian
▴ 10
0
votes
1
reply
1.0k
views
News:
Single Package Builder Updates and Testing
packages
review
spb
News
6.3 years ago
shepherl
3.8k
2
votes
2
replies
1.3k
views
Packages employing RangedSummarizedExperiment objects
rangedsummarizedexperiment
packages
granges
iranges
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
rbronste
▴ 60
2
votes
1
reply
968
views
Large Size of R packages containing S4 classes
S4
packages
updated 5.6 years ago by
Michael Lawrence
★ 11k • written 5.6 years ago by
lukaszbednarz
▴ 10
0
votes
1
reply
1.9k
views
Installation of r2excel package
github
packages
updated 5.2 years ago by
Gordon Smyth
50k • written 5.2 years ago by
thkapell
▴ 10
0
votes
1
reply
1.6k
views
R: oligo packages install error
oligo
packages
error
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
get3232
• 0
0
votes
1
reply
1.0k
views
Couldnt find getAE and ae2bioc?
getAE
ae2bioc
bioconductor
packages
library
updated 4.5 years ago by
Mike Smith
★ 6.5k • written 4.5 years ago by
kodherif
• 0
0
votes
2
replies
1.2k
views
Unable to install package
packages
installation
GenomeGraphs
updated 4.1 years ago by
James W. MacDonald
65k • written 4.1 years ago by
alex
• 0
1
vote
1
reply
813
views
Error when installing edgeR and DESeq package
software error
packages
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
yassiflower
• 0
1
vote
5
replies
2.9k
views
Updating Out of Date BiocManager Packages
biocmanager
valid
update
packages
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
bs14ab
• 0
1
vote
6
replies
2.1k
views
Bioconductor installation problems
packages
installation
Bioconductor
updating
updated 2.0 years ago by
Marcel Ramos
690 • written 2.0 years ago by
jose
▴ 10
0
votes
1
reply
1.1k
views
trouble installing DESeq2
install
packages
R
DESeq2
updated 22 months ago by
shepherl
3.8k • written 22 months ago by
eruan1
• 0
5
votes
1
reply
384
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 5 months ago by
shepherl
3.8k
0
votes
2
replies
538
views
Bioconductor API or dataset
Bioconductor
Packages
Dataset
API
updated 13 months ago by
Marcel Ramos
690 • written 13 months ago by
dab0012
• 0
2
votes
2
replies
986
views
News:
Bioconductor Devel 3.11 Notification
software
bioconductor
packages
reports
News
4.4 years ago
shepherl
3.8k
5
votes
0
replies
996
views
News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
2.9 years ago • updated 2.8 years ago
shepherl
3.8k
1
vote
0
replies
746
views
News:
Bioconductor Release 3.11 Schedule Posted
release
deadlines
builds
packages
News
4.1 years ago
shepherl
3.8k
3
votes
4
replies
1.4k
views
Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
4.0 years ago
dakarai_esgdaille
▴ 10
4
votes
0
replies
777
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
packages
News
3.9 years ago
shepherl
3.8k
0
votes
0
replies
1.6k
views
what R package prediction secondary structure for amino acids
packages
8.9 years ago
m016648
• 0
8
votes
0
replies
802
views
News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
23 months ago
shepherl
3.8k
0
votes
4
replies
2.2k
views
Error: unexpected string constant in "suppressPackageStartupMessages(.getRequiredPackages(quietly = TRUE)), when installed the package "Mus.musculus"…
install
packages
Mus.musculus
updated 3.8 years ago by
Kevin Blighe
★ 3.9k • written 3.8 years ago by
443606623
• 0
0
votes
3
replies
1.2k
views
Cant update old packages
software error
packages
update
updated 3.7 years ago by
James W. MacDonald
65k • written 3.7 years ago by
bs14ab
• 0
0
votes
0
replies
935
views
News:
Bioconductor Release 3.12 Schedule Posted
packages
release
deadlines
builds
News
3.6 years ago
shepherl
3.8k
4
votes
0
replies
903
views
News:
Bioconductor 3.12 is Released!
Software
release
Bioconductor
Packages
Release
3.4 years ago
shepherl
3.8k
0
votes
2
replies
1.0k
views
cannot install various functions in R
GRanges
packages
installation
updated 23 months ago by
shepherl
3.8k • written 23 months ago by
Eli
• 0
4
votes
0
replies
615
views
News:
Bioconductor Release 3.16 Schedule
Release
Devel
packages
release
devel
18 months ago
shepherl
3.8k
12
votes
5
replies
1.8k
views
News:
DOI for packages
DOI
doi
packages
citation
publication
News
6.4 years ago
shepherl
3.8k
1
vote
0
replies
812
views
News:
Bioconductor Release 3.14 Schedule
devel
Devel
release
packages
Release
2.5 years ago
shepherl
3.8k
1
vote
2
replies
2.3k
views
Error : object path is not exported by namespace:Rsamtools
packages
installation problem
rsamtools
chippeakanno
ensembldb
6.3 years ago
inzirio
▴ 10
1
vote
0
replies
758
views
News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
17 months ago
shepherl
3.8k
0
votes
0
replies
1.5k
views
News:
New Package Submission Deadline
Packages
News
8.1 years ago
Martin Morgan
25k
1
vote
1
reply
964
views
News:
DEADLINE: commits to Bioc 3.7
release
bioconductor
packages
package updates
News
5.9 years ago
shepherl
3.8k
0
votes
0
replies
774
views
News:
knitr ERROR on Biocondcutor builders
Devel
Bioconductor
Packages
BuildReport
devel
2.7 years ago
shepherl
3.8k
0
votes
0
replies
544
views
News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
11 months ago
shepherl
3.8k
8
votes
0
replies
855
views
News:
Bioconductor 3.14 is Released!
release
Packages
Software
Release
Bioconductor
2.4 years ago
shepherl
3.8k
0
votes
1
reply
4.5k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
4.6 years ago
444579004
• 0
1
vote
4
replies
1.4k
views
Merging two files based on the identifier column (gene symbols)?
merge
files
R
packages
gene annotations
4.6 years ago
mohammedtoufiq91
▴ 10
1
vote
0
replies
788
views
News:
Bioconductor Release 3.15 Schedule
Devel
release
packages
Release
devel
2.1 years ago
shepherl
3.8k
50 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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