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News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 5 months ago by
shepherl
3.8k
0
votes
0
replies
545
views
News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
11 months ago
shepherl
3.8k
0
votes
2
replies
539
views
Bioconductor API or dataset
Bioconductor
Packages
Dataset
API
updated 13 months ago by
Marcel Ramos
690 • written 13 months ago by
dab0012
• 0
1
vote
0
replies
758
views
News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
17 months ago
shepherl
3.8k
4
votes
0
replies
615
views
News:
Bioconductor Release 3.16 Schedule
Release
Devel
packages
release
devel
18 months ago
shepherl
3.8k
0
votes
1
reply
1.1k
views
trouble installing DESeq2
install
packages
R
DESeq2
updated 22 months ago by
shepherl
3.8k • written 22 months ago by
eruan1
• 0
0
votes
2
replies
1.0k
views
cannot install various functions in R
GRanges
packages
installation
updated 23 months ago by
shepherl
3.8k • written 23 months ago by
Eli
• 0
8
votes
0
replies
802
views
News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
23 months ago
shepherl
3.8k
1
vote
6
replies
2.1k
views
Bioconductor installation problems
packages
installation
Bioconductor
updating
updated 2.0 years ago by
Marcel Ramos
690 • written 2.0 years ago by
jose
▴ 10
1
vote
0
replies
788
views
News:
Bioconductor Release 3.15 Schedule
Devel
release
packages
Release
devel
2.1 years ago
shepherl
3.8k
8
votes
0
replies
855
views
News:
Bioconductor 3.14 is Released!
release
Packages
Software
Release
Bioconductor
2.4 years ago
shepherl
3.8k
1
vote
0
replies
813
views
News:
Bioconductor Release 3.14 Schedule
devel
Devel
release
packages
Release
2.5 years ago
shepherl
3.8k
0
votes
0
replies
774
views
News:
knitr ERROR on Biocondcutor builders
Devel
Bioconductor
Packages
BuildReport
devel
2.7 years ago
shepherl
3.8k
0
votes
1
reply
631
views
Notification for package release?
packages
updated 2.8 years ago by
Lluís Revilla Sancho
▴ 730 • written 2.8 years ago by
curiousmind007
▴ 10
5
votes
0
replies
996
views
News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
2.9 years ago • updated 2.8 years ago
shepherl
3.8k
4
votes
0
replies
903
views
News:
Bioconductor 3.12 is Released!
Software
release
Bioconductor
Packages
Release
3.4 years ago
shepherl
3.8k
0
votes
0
replies
935
views
News:
Bioconductor Release 3.12 Schedule Posted
packages
release
deadlines
builds
News
3.6 years ago
shepherl
3.8k
0
votes
3
replies
1.2k
views
Cant update old packages
software error
packages
update
updated 3.7 years ago by
James W. MacDonald
65k • written 3.7 years ago by
bs14ab
• 0
0
votes
4
replies
2.2k
views
Error: unexpected string constant in "suppressPackageStartupMessages(.getRequiredPackages(quietly = TRUE)), when installed the package "Mus.musculus"…
install
packages
Mus.musculus
updated 3.8 years ago by
Kevin Blighe
★ 3.9k • written 3.8 years ago by
443606623
• 0
1
vote
1
reply
814
views
Error when installing edgeR and DESeq package
software error
packages
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
yassiflower
• 0
1
vote
5
replies
2.9k
views
Updating Out of Date BiocManager Packages
biocmanager
valid
update
packages
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
bs14ab
• 0
3
votes
3
replies
1.2k
views
Incomplete Install of Bioconductor Packages
Installation
Packages
Missing
updated 3.7 years ago by
Laurent Gatto
1.6k • written 3.9 years ago by
sreedta8
▴ 10
4
votes
0
replies
777
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
packages
News
3.9 years ago
shepherl
3.8k
3
votes
4
replies
1.4k
views
Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
4.0 years ago
dakarai_esgdaille
▴ 10
1
vote
0
replies
746
views
News:
Bioconductor Release 3.11 Schedule Posted
release
deadlines
builds
packages
News
4.1 years ago
shepherl
3.8k
0
votes
2
replies
1.2k
views
Unable to install package
packages
installation
GenomeGraphs
updated 4.1 years ago by
James W. MacDonald
65k • written 4.1 years ago by
alex
• 0
2
votes
2
replies
986
views
News:
Bioconductor Devel 3.11 Notification
software
bioconductor
packages
reports
News
4.4 years ago
shepherl
3.8k
6
votes
0
replies
824
views
News:
Bioconductor 3.10 is released!!
release
software
packages
bioconductor
News
4.4 years ago
shepherl
3.8k
0
votes
1
reply
1.0k
views
Couldnt find getAE and ae2bioc?
getAE
ae2bioc
bioconductor
packages
library
updated 4.5 years ago by
Mike Smith
★ 6.5k • written 4.5 years ago by
kodherif
• 0
1
vote
4
replies
1.4k
views
Merging two files based on the identifier column (gene symbols)?
merge
files
R
packages
gene annotations
4.6 years ago
mohammedtoufiq91
▴ 10
0
votes
1
reply
4.5k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
4.6 years ago
444579004
• 0
0
votes
1
reply
1.6k
views
R: oligo packages install error
oligo
packages
error
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
get3232
• 0
0
votes
1
reply
1.9k
views
Installation of r2excel package
github
packages
updated 5.2 years ago by
Gordon Smyth
50k • written 5.2 years ago by
thkapell
▴ 10
2
votes
1
reply
969
views
Large Size of R packages containing S4 classes
S4
packages
updated 5.6 years ago by
Michael Lawrence
★ 11k • written 5.6 years ago by
lukaszbednarz
▴ 10
1
vote
1
reply
967
views
News:
DEADLINE: commits to Bioc 3.7
release
bioconductor
packages
package updates
News
5.9 years ago
shepherl
3.8k
0
votes
2
replies
1.9k
views
Issues installing packages miniconda environment
bioclite
deseq2
miniconda
packages
6.1 years ago
cpat
• 0
2
votes
2
replies
1.3k
views
Packages employing RangedSummarizedExperiment objects
rangedsummarizedexperiment
packages
granges
iranges
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
rbronste
▴ 60
1
vote
2
replies
2.3k
views
Error : object path is not exported by namespace:Rsamtools
packages
installation problem
rsamtools
chippeakanno
ensembldb
6.3 years ago
inzirio
▴ 10
0
votes
1
reply
1.0k
views
News:
Single Package Builder Updates and Testing
packages
review
spb
News
6.3 years ago
shepherl
3.8k
0
votes
2
replies
1.2k
views
News:
Single Package Builder / New Package Submission
new submission
build report
packages
News
6.4 years ago
shepherl
3.8k
12
votes
5
replies
1.9k
views
News:
DOI for packages
DOI
doi
packages
citation
publication
News
6.4 years ago
shepherl
3.8k
3
votes
3
replies
1.5k
views
Question regarding best bioconductor package for RNA-seq
rna-seq
packages
updated 7.1 years ago by
b.nota
▴ 360 • written 7.1 years ago by
Maximilian
▴ 10
3
votes
6
replies
2.2k
views
List of package names with versions
packages
updated 8.1 years ago by
Sushant Pawar
• 0 • written 8.1 years ago by
nathan.watsonhaigh
• 0
0
votes
0
replies
1.5k
views
News:
New Package Submission Deadline
Packages
News
8.1 years ago
Martin Morgan
25k
0
votes
4
replies
1.5k
views
Newbee question: how to output/write data (measureents) to a text file?
packages
8.2 years ago
Reinert Korsnes
• 0
2
votes
1
reply
2.7k
views
Installation of bioConductor packages
installation
packages
bioconductor
all
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
av
• 0
2
votes
4
replies
2.3k
views
Package RnBeads not available for R 3.1.2?
RnBeads
packages
R 3.1.2
8.7 years ago
bmreilly
• 0
0
votes
0
replies
1.6k
views
what R package prediction secondary structure for amino acids
packages
8.9 years ago
m016648
• 0
2
votes
7
replies
1.2k
views
Is there a way to find corresponding svn revision for the current /devel/src/contrib/PACKAGES and /release?
svn
PACKAGES
updated 9.0 years ago by
Dan Tenenbaum
★ 8.2k • written 9.0 years ago by
levk
• 0
1
vote
11
replies
2.0k
views
Bioconductor Software Packages raw (not html) detail view?
packages
details
9.1 years ago • updated 8.7 years ago
smoretti
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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