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Parallel
•
reset
0
votes
0
replies
710
views
set.seed in function vs clusterSetRNGStream: switching from one to another
parallel
seed
2.2 years ago
ZheFrench
▴ 60
0
votes
1
reply
1.1k
views
Running limma in parallel
parallel
R
limma
EWAS
updated 2.5 years ago by
Gordon Smyth
51k • written 2.5 years ago by
Lorenzo
• 0
3
votes
4
replies
1.6k
views
DiffBind (Error in if (DBA$config$parallelPackage))
parallel
R
DiffBind
updated 2.8 years ago by
Rory Stark
★ 5.2k • written 3.0 years ago by
eggrandio
• 0
1
vote
1
reply
1.6k
views
DiffBind error with background=TRUE in dba.normalize?
BiocParallel
DiffBind
parallel
updated 3.7 years ago by
Rory Stark
★ 5.2k • written 3.7 years ago by
Victor
• 0
7
votes
4
replies
1.9k
views
How does BiocParallel export variables to threads?
BiocParallel
SnowParam
parallel
updated 4.2 years ago by
Martin Morgan
25k • written 4.2 years ago by
gabriel.hoffman
▴ 160
0
votes
1
reply
627
views
Using multiple cores SCTensor package
SCTensor
Single Cell RNA Seq
Parallel
4.8 years ago
ieuangw
• 0
0
votes
4
replies
1.9k
views
DESeq2 using many cores despite parallel = FALSE
deseq2
parallel
updated 4.9 years ago by
Michael Love
42k • written 4.9 years ago by
symbiologist
• 0
6
votes
12
replies
2.1k
views
mclapply to loop over a GRangesList object
GenomicRanges
GRanges
GRangesList
parallel
mclapply
5.6 years ago
foehn
▴ 100
0
votes
0
replies
1.3k
views
miR2Pathway Finite Observations
pathway analysis
mirna
parallel
6.5 years ago
genomic8328
▴ 10
0
votes
1
reply
1.1k
views
DiffBind count warning
diffbind
parallel
updated 6.6 years ago by
Rory Stark
★ 5.2k • written 6.6 years ago by
ghosos
• 0
1
vote
5
replies
2.6k
views
DiffBind does not run in parallel
diffbind
parallel
biocparallel
updated 6.6 years ago by
Rory Stark
★ 5.2k • written 6.6 years ago by
eggrandio
• 0
3
votes
3
replies
1.7k
views
BiocParallel: zombie processes on FORK cluster
biocparallel
parallel
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
alserg
▴ 280
1
vote
0
replies
1.6k
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
6.7 years ago
s.munster
▴ 40
2
votes
10
replies
2.3k
views
Correct way to load a package inside bplapply function
parallel
biocparallel
7.1 years ago • updated 7.0 years ago
felix.ernst
• 0
2
votes
3
replies
2.9k
views
BiocParallel::bplapply() performance with MulticoreParam() is worse than mclapply()
biocparallel
parallel
7.3 years ago
davide risso
▴ 980
1
vote
1
reply
1.6k
views
sva: Parallel execution of sva()-function fails.
sva
parallel
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
maltethodberg
▴ 180
4
votes
1
reply
1.4k
views
Parallel Join Excessively Slow
biocparallel
curatedmetagenomicdata
parallel
dplyr
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
Lucas Schiffer
▴ 240
1
vote
6
replies
1.7k
views
Multithreading problems with qalign
quasr
parallel
updated 7.8 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 7.8 years ago by
kirt.onthank
• 0
0
votes
1
reply
1.3k
views
BiocParallel and variable scope in child processes
parallel
variable scope
fork
BiocParallel
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
dan.gatti
• 0
0
votes
1
reply
1.3k
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
8.6 years ago
rna seq
▴ 90
0
votes
9
replies
2.4k
views
problem using >3 clusters with Quasr
quasr
parallel
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
rna seq
▴ 90
2
votes
4
replies
1.5k
views
Running HTSFilter in paralell
htsfilter
parallel
updated 8.7 years ago by
andrea.rau
▴ 80 • written 8.7 years ago by
Richard Yanicky
▴ 10
0
votes
4
replies
1.5k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
8.7 years ago
ben.ward
▴ 30
0
votes
3
replies
1.8k
views
DEXSeqHTML parallelization error
Parallel
DEXSeq
DEXSeqHTML
8.8 years ago
Neel Aluru
▴ 460
0
votes
1
reply
1.3k
views
Paralelization of maSigPro
maSigPro
parallel
8.9 years ago
gmdc
• 0
0
votes
1
reply
1.4k
views
News:
Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
Course
RNA-Seq
Chip-seq
Parallel
News
9.5 years ago
Martin Morgan
25k
1
vote
1
reply
1.1k
views
trigger package fails at parallalization - Transcriptional Regulatory Inference from Genetics of ExpRession
trigger
parallel
processing
multicore
updated 9.9 years ago by
Valerie Obenchain
★ 6.8k • written 9.9 years ago by
affennacken
• 0
27 results • Page
1 of 1
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Comment: SingleR Label.Ont
by
Stepah
• 0
[Aussie Play][1] cares about its Australian players by offering a safe and secure gaming experience where there is never a dull moment. The…
Comment: ensemblVEP deprecation and how to reproduce
by
Vincent J. Carey, Jr.
6.7k
What aspect of ensemblVEP are you looking for? The vignette https://bioconductor.org/packages/release/bioc/vignettes/VariantAnnotation/in…
Answer: Help with design matrix for RNA-seq data using edgeR
by
Gordon Smyth
51k
This forum is intended to help with software usage and syntax rather than to answer research questions, and your question is a definitely a…
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
by
Michael Love
42k
DESeq2 has a way of fixing the reference pseudo-sample used for normalization. In estimateSizeFactors man page, you will see an argument g…
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
by
Michael Love
42k
Sorry - I requested this to be posted here, I will answer.
Votes
Answer: Help with design matrix for RNA-seq data using edgeR
Answer: Should tSNE from biol. replicates look alike?
Answer: Should tSNE from biol. replicates look alike?
Comment: fgsea stuck in an infinite loop in the middle of the run
Answer: Empty Results from champ.DMP Despite Expected Output
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James W. MacDonald
67k
Popular Question
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Matthew Thornton
▴ 380
Popular Question
to
ZheFrench
▴ 60
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Gordon Smyth
51k
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erik.burchard
• 0
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