Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Parallel
•
reset
0
votes
0
replies
582
views
set.seed in function vs clusterSetRNGStream: switching from one to another
parallel
seed
21 months ago
ZheFrench
▴ 40
0
votes
1
reply
913
views
Running limma in parallel
parallel
R
limma
EWAS
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
Lorenzo
• 0
3
votes
4
replies
1.3k
views
DiffBind (Error in if (DBA$config$parallelPackage))
parallel
R
DiffBind
updated 2.3 years ago by
Rory Stark
★ 5.1k • written 2.6 years ago by
eggrandio
• 0
1
vote
1
reply
1.3k
views
DiffBind error with background=TRUE in dba.normalize?
BiocParallel
DiffBind
parallel
updated 3.2 years ago by
Rory Stark
★ 5.1k • written 3.2 years ago by
Victor
• 0
7
votes
4
replies
1.6k
views
How does BiocParallel export variables to threads?
BiocParallel
SnowParam
parallel
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
gabriel.hoffman
▴ 100
0
votes
1
reply
514
views
Using multiple cores SCTensor package
SCTensor
Single Cell RNA Seq
Parallel
4.4 years ago
ieuangw
• 0
0
votes
4
replies
1.6k
views
DESeq2 using many cores despite parallel = FALSE
deseq2
parallel
updated 4.5 years ago by
Michael Love
41k • written 4.5 years ago by
symbiologist
• 0
6
votes
12
replies
1.8k
views
mclapply to loop over a GRangesList object
GenomicRanges
GRanges
GRangesList
parallel
mclapply
5.1 years ago
foehn
▴ 100
0
votes
0
replies
1.2k
views
miR2Pathway Finite Observations
pathway analysis
mirna
parallel
6.0 years ago
genomic8328
▴ 10
0
votes
1
reply
947
views
DiffBind count warning
diffbind
parallel
updated 6.1 years ago by
Rory Stark
★ 5.1k • written 6.1 years ago by
ghosos
• 0
1
vote
5
replies
2.3k
views
DiffBind does not run in parallel
diffbind
parallel
biocparallel
updated 6.2 years ago by
Rory Stark
★ 5.1k • written 6.2 years ago by
eggrandio
• 0
3
votes
3
replies
1.6k
views
BiocParallel: zombie processes on FORK cluster
biocparallel
parallel
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
alserg
▴ 240
1
vote
0
replies
1.4k
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
6.3 years ago
s.munster
▴ 40
2
votes
10
replies
2.0k
views
Correct way to load a package inside bplapply function
parallel
biocparallel
6.6 years ago
felix.ernst
• 0
2
votes
3
replies
2.7k
views
BiocParallel::bplapply() performance with MulticoreParam() is worse than mclapply()
biocparallel
parallel
6.8 years ago
davide risso
▴ 950
1
vote
1
reply
1.5k
views
sva: Parallel execution of sva()-function fails.
sva
parallel
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
maltethodberg
▴ 170
4
votes
1
reply
1.3k
views
Parallel Join Excessively Slow
biocparallel
curatedmetagenomicdata
parallel
dplyr
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
Lucas Schiffer
▴ 240
1
vote
6
replies
1.5k
views
Multithreading problems with qalign
quasr
parallel
updated 7.3 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 7.3 years ago by
kirt.onthank
• 0
0
votes
1
reply
1.2k
views
BiocParallel and variable scope in child processes
parallel
variable scope
fork
BiocParallel
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
dan.gatti
• 0
0
votes
1
reply
1.2k
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
8.1 years ago
rna seq
▴ 90
0
votes
9
replies
2.1k
views
problem using >3 clusters with Quasr
quasr
parallel
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
rna seq
▴ 90
2
votes
4
replies
1.3k
views
Running HTSFilter in paralell
htsfilter
parallel
updated 8.2 years ago by
andrea.rau
▴ 80 • written 8.2 years ago by
Richard Yanicky
▴ 10
0
votes
4
replies
1.4k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
8.3 years ago
ben.ward
▴ 30
0
votes
3
replies
1.6k
views
DEXSeqHTML parallelization error
Parallel
DEXSeq
DEXSeqHTML
8.3 years ago
Neel Aluru
▴ 460
0
votes
1
reply
1.1k
views
Paralelization of maSigPro
maSigPro
parallel
8.5 years ago
gmdc
• 0
0
votes
1
reply
1.3k
views
News:
Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
Course
RNA-Seq
Chip-seq
Parallel
News
9.1 years ago
Martin Morgan
25k
1
vote
1
reply
1.0k
views
trigger package fails at parallalization - Transcriptional Regulatory Inference from Genetics of ExpRession
trigger
parallel
processing
multicore
updated 9.4 years ago by
Valerie Obenchain
★ 6.8k • written 9.4 years ago by
affennacken
• 0
27 results • Page
1 of 1
Recent ...
Replies
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Awards
• All
Popular Question
to
James W. MacDonald
65k
Popular Question
to
Pierre Lindenbaum
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Jenny Drnevich
★ 2.0k
Popular Question
to
Robert Castelo
★ 3.1k
Locations
• All
United States,
12 minutes ago
UPF, Barcelona, Spain,
23 minutes ago
Denmark,
36 minutes ago
United States,
1 hour ago
United States,
1 hour ago
Traffic: 949 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6