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Pathway
•
reset
2
votes
11
replies
4.4k
views
Recent build and parsing error in pathview
pathview
KEGGgraph
gage
pathway
pathway analysis
6.7 years ago
Luo Weijun
★ 1.6k
2
votes
2
replies
1.4k
views
paxtoolsr how to extract Modificationfeature related to a node
pathway
paxtools
9.4 years ago
Guido Leoni
▴ 200
5
votes
6
replies
1.4k
views
DESeq2 w. pathway/network info as a prior knowledge
deseq2
pathway
ihw
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
guidobarzaghi
▴ 20
0
votes
2
replies
702
views
Adjusting DESeq2 p-values through IHW using pathway information as covariate
IHW
deseq2
Pathway
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
guidobarzaghi
▴ 20
2
votes
3
replies
1.0k
views
Accounting for Gene Set Overlaps in Goana and Kegga Results
limma
pathway
updated 4.6 years ago by
mikhael.manurung
▴ 270 • written 4.6 years ago by
Dario Strbenac
★ 1.5k
4
votes
4
replies
1.6k
views
How I interpret this plot from pathview
pathview
kegg
r
pathway
4.4 years ago • updated 4.3 years ago
AZ
▴ 30
3
votes
3
replies
4.4k
views
Genelist input for ClusterProfiler
R
ClusterProfiler
Enrichment
Pathway
updated 9 months ago by
Guido Hooiveld
★ 3.9k • written 3.9 years ago by
t.b.kuipers
• 0
0
votes
3
replies
1.0k
views
extracting the genes associated with a specific pathway
pathway
KEGG
annotation
annotationhub
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
Bogdan
▴ 670
2
votes
1
reply
941
views
GSEA generate genesets
pathway
KEGGREST
GSEA
updated 3.0 years ago by
Kevin Blighe
★ 3.9k • written 3.0 years ago by
MOHAMMAD
• 0
1
vote
3
replies
576
views
Can CAMERA analyze just one particular pathway
pathway
ORA
limma
CAMERA
DGE
updated 7 months ago by
Gordon Smyth
50k • written 7 months ago by
manuelsokolov
• 0
0
votes
1
reply
872
views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph
miR2Pathway
Pathway
page_rank
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
genomic8328
▴ 10
0
votes
1
reply
880
views
News:
SBGNview manuscript on bioRxiv now
pathway
SBGNview
Reactome
pathview
PANTHER
written 3.0 years ago by
Luo Weijun
★ 1.6k
0
votes
0
replies
761
views
Help with mapping Kegg hsa01100 using pathview
kegg
pathway
pathview
5.1 years ago
Ahdee
▴ 50
13 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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